Results 21 - 39 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 134818 | 0.68 | 0.934029 |
Target: 5'- cUGcUGCCccagcUGCUGC-CGACGGCg -3' miRNA: 3'- aAC-ACGGcuua-ACGACGaGCUGCCGg -5' |
|||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 182456 | 0.68 | 0.934029 |
Target: 5'- -cGUGCgGGcgUGgUGCUCG-UGGCa -3' miRNA: 3'- aaCACGgCUuaACgACGAGCuGCCGg -5' |
|||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 227613 | 0.68 | 0.928954 |
Target: 5'- ---gGCCGGAggGCggGCggCGGCGGCg -3' miRNA: 3'- aacaCGGCUUaaCGa-CGa-GCUGCCGg -5' |
|||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 121377 | 0.68 | 0.928954 |
Target: 5'- ---gGCCGGAgaGgaGggCGACGGCCg -3' miRNA: 3'- aacaCGGCUUaaCgaCgaGCUGCCGG- -5' |
|||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 91350 | 0.68 | 0.928954 |
Target: 5'- --cUGCCa----GCUGCUCGACGGgCu -3' miRNA: 3'- aacACGGcuuaaCGACGAGCUGCCgG- -5' |
|||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 136078 | 0.68 | 0.923644 |
Target: 5'- -gGUGgCGGcguuccUGCUGCUgcucgcgcuggCGGCGGCCa -3' miRNA: 3'- aaCACgGCUua----ACGACGA-----------GCUGCCGG- -5' |
|||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 186464 | 0.69 | 0.900055 |
Target: 5'- ---cGCCuccgUGCUGCUCGGcCGGCg -3' miRNA: 3'- aacaCGGcuuaACGACGAGCU-GCCGg -5' |
|||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 115822 | 0.69 | 0.893579 |
Target: 5'- cUGUGCCacccggUGCUGCaCGACgcgGGCCc -3' miRNA: 3'- aACACGGcuua--ACGACGaGCUG---CCGG- -5' |
|||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 31674 | 0.69 | 0.886877 |
Target: 5'- cUGUGuCCGAucgGCUGUg-GGCGGUCa -3' miRNA: 3'- aACAC-GGCUuaaCGACGagCUGCCGG- -5' |
|||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 224944 | 0.69 | 0.886877 |
Target: 5'- -cGUGCCGG--UGUcGCUCGGCuccGCCg -3' miRNA: 3'- aaCACGGCUuaACGaCGAGCUGc--CGG- -5' |
|||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 209933 | 0.69 | 0.879953 |
Target: 5'- --aUGCuCGAGgucuucgUGCUGCUCGACcgGGCg -3' miRNA: 3'- aacACG-GCUUa------ACGACGAGCUG--CCGg -5' |
|||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 176457 | 0.7 | 0.864711 |
Target: 5'- -gGUGUCGggUUccGCgGCUCucuucuccuggauGGCGGCCg -3' miRNA: 3'- aaCACGGCuuAA--CGaCGAG-------------CUGCCGG- -5' |
|||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 112507 | 0.7 | 0.83403 |
Target: 5'- -cGUGCacguccagggaCGAGUUGCUGUUgcaGACGGCg -3' miRNA: 3'- aaCACG-----------GCUUAACGACGAg--CUGCCGg -5' |
|||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 221757 | 0.7 | 0.825703 |
Target: 5'- ---cGUCGAAcgGCaGCUgGGCGGCCg -3' miRNA: 3'- aacaCGGCUUaaCGaCGAgCUGCCGG- -5' |
|||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 132092 | 0.71 | 0.78162 |
Target: 5'- ---aGCCGGAgcGCUcggaccgggGCUCGAgGGCCg -3' miRNA: 3'- aacaCGGCUUaaCGA---------CGAGCUgCCGG- -5' |
|||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 117889 | 0.72 | 0.72446 |
Target: 5'- ---cGCCGGGggcccgucGCUGCUCcACGGCCa -3' miRNA: 3'- aacaCGGCUUaa------CGACGAGcUGCCGG- -5' |
|||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 98125 | 0.74 | 0.664473 |
Target: 5'- --uUGCCGGGgcGCUGgUCGucGCGGCCg -3' miRNA: 3'- aacACGGCUUaaCGACgAGC--UGCCGG- -5' |
|||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 223625 | 0.76 | 0.543336 |
Target: 5'- cUGUcGCUGG--UGCUGCUCGGCGGgCu -3' miRNA: 3'- aACA-CGGCUuaACGACGAGCUGCCgG- -5' |
|||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 198269 | 0.79 | 0.38735 |
Target: 5'- -aGUGCCGGA--GCUGCUCGA-GGCUg -3' miRNA: 3'- aaCACGGCUUaaCGACGAGCUgCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home