miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9384 3' -52.1 NC_002512.2 + 104350 0.66 0.995335
Target:  5'- gUUCCUggUGCCGcGg--CGGCaCGGCa -3'
miRNA:   3'- -AAGGGuuAUGGUaCauaGCUG-GCCGc -5'
9384 3' -52.1 NC_002512.2 + 102974 0.66 0.995335
Target:  5'- gUCCCGGUACCAgacgaagacGUAgagcUCGGCCaGGUu -3'
miRNA:   3'- aAGGGUUAUGGUa--------CAU----AGCUGG-CCGc -5'
9384 3' -52.1 NC_002512.2 + 117764 0.66 0.99467
Target:  5'- cUCCCGAUGCaCGUGUAccgcaacgaggagaUCGACgcguggguccgccaGGCGa -3'
miRNA:   3'- aAGGGUUAUG-GUACAU--------------AGCUGg-------------CCGC- -5'
9384 3' -52.1 NC_002512.2 + 171298 0.66 0.993754
Target:  5'- aUUCCCuuugcgacGCCAUGUugaGcACCGGCGu -3'
miRNA:   3'- -AAGGGuua-----UGGUACAuagC-UGGCCGC- -5'
9384 3' -52.1 NC_002512.2 + 92604 0.66 0.993754
Target:  5'- gUCCCGAgGCCG-GUcgCGACgacggacggaCGGCGg -3'
miRNA:   3'- aAGGGUUaUGGUaCAuaGCUG----------GCCGC- -5'
9384 3' -52.1 NC_002512.2 + 191516 0.66 0.991768
Target:  5'- cUUCCUAcgaggagGCCGUGggGUCGGgcgacCCGGCGg -3'
miRNA:   3'- -AAGGGUua-----UGGUACa-UAGCU-----GGCCGC- -5'
9384 3' -52.1 NC_002512.2 + 129731 0.67 0.990603
Target:  5'- aUCCC---GCCcUGUugucGUCGACCGGUc -3'
miRNA:   3'- aAGGGuuaUGGuACA----UAGCUGGCCGc -5'
9384 3' -52.1 NC_002512.2 + 180531 0.67 0.989313
Target:  5'- aUUCCUggU-CCAguucGUcGUCGAUCGGCGc -3'
miRNA:   3'- -AAGGGuuAuGGUa---CA-UAGCUGGCCGC- -5'
9384 3' -52.1 NC_002512.2 + 157069 0.67 0.986321
Target:  5'- gUCCCGGgguCCGgg-GUCG-CCGGCGc -3'
miRNA:   3'- aAGGGUUau-GGUacaUAGCuGGCCGC- -5'
9384 3' -52.1 NC_002512.2 + 192928 0.67 0.986156
Target:  5'- -cUCCGAUGCCAgggaugaUGaGUCGACgCGGCc -3'
miRNA:   3'- aaGGGUUAUGGU-------ACaUAGCUG-GCCGc -5'
9384 3' -52.1 NC_002512.2 + 186419 0.68 0.982724
Target:  5'- cUUCCAc-GCCGUGc-UCGGCCGGCu -3'
miRNA:   3'- aAGGGUuaUGGUACauAGCUGGCCGc -5'
9384 3' -52.1 NC_002512.2 + 113161 0.68 0.982724
Target:  5'- cUCgCCGcgGCCGggcgGgacgCGACCGGCGu -3'
miRNA:   3'- aAG-GGUuaUGGUa---Caua-GCUGGCCGC- -5'
9384 3' -52.1 NC_002512.2 + 39071 0.68 0.980678
Target:  5'- gUCuCCGAUuCCAU---UCGACCGGUGa -3'
miRNA:   3'- aAG-GGUUAuGGUAcauAGCUGGCCGC- -5'
9384 3' -52.1 NC_002512.2 + 160823 0.68 0.977518
Target:  5'- -cCCCGGcACCAgcaggcgggCGGCCGGCGg -3'
miRNA:   3'- aaGGGUUaUGGUacaua----GCUGGCCGC- -5'
9384 3' -52.1 NC_002512.2 + 158306 0.68 0.976052
Target:  5'- -cCCCAAgGCCGcg-GUCGuCCGGCGc -3'
miRNA:   3'- aaGGGUUaUGGUacaUAGCuGGCCGC- -5'
9384 3' -52.1 NC_002512.2 + 222171 0.68 0.973457
Target:  5'- aUCCCGAcGCCuacucccgGgccgCGGCCGGCGu -3'
miRNA:   3'- aAGGGUUaUGGua------Caua-GCUGGCCGC- -5'
9384 3' -52.1 NC_002512.2 + 221226 0.69 0.970663
Target:  5'- gUCCCGAacgGCUugagGUcgAUCGGCCGGCc -3'
miRNA:   3'- aAGGGUUa--UGGua--CA--UAGCUGGCCGc -5'
9384 3' -52.1 NC_002512.2 + 220821 0.69 0.970663
Target:  5'- gUCCCGccgcugGCCGUGcucGUCGACgGGCu -3'
miRNA:   3'- aAGGGUua----UGGUACa--UAGCUGgCCGc -5'
9384 3' -52.1 NC_002512.2 + 196640 0.69 0.970663
Target:  5'- --gCCGAcGCCGUGUGUCuggggGGCCGGUa -3'
miRNA:   3'- aagGGUUaUGGUACAUAG-----CUGGCCGc -5'
9384 3' -52.1 NC_002512.2 + 153257 0.69 0.963789
Target:  5'- -aCCCGAUGCgAUGcggcggguccugGUCGGCUGGCu -3'
miRNA:   3'- aaGGGUUAUGgUACa-----------UAGCUGGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.