miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9384 5' -53.7 NC_002512.2 + 152821 0.66 0.988882
Target:  5'- gGUCcCCGGUCGAaaaggaucggGCcuCGCGGUCc- -3'
miRNA:   3'- -UAGaGGCCAGCUa---------UGuuGCGCCAGuc -5'
9384 5' -53.7 NC_002512.2 + 222478 0.66 0.985858
Target:  5'- -cCUCgCGGUCGu--CAACGUGG-CGGu -3'
miRNA:   3'- uaGAG-GCCAGCuauGUUGCGCCaGUC- -5'
9384 5' -53.7 NC_002512.2 + 140387 0.66 0.985184
Target:  5'- cGUCUCCGcG-CGGUACAcaaacgucacguuCGCGGUCu- -3'
miRNA:   3'- -UAGAGGC-CaGCUAUGUu------------GCGCCAGuc -5'
9384 5' -53.7 NC_002512.2 + 132515 0.66 0.983946
Target:  5'- cGUCUCCGGccgccgCGGUccccgcuccgcggGCGGCGCcGUCGGc -3'
miRNA:   3'- -UAGAGGCCa-----GCUA-------------UGUUGCGcCAGUC- -5'
9384 5' -53.7 NC_002512.2 + 153237 0.67 0.9782
Target:  5'- cGUC-CCGGgcucccuggcaaaccCGAUGCGAUGCGG-CGGg -3'
miRNA:   3'- -UAGaGGCCa--------------GCUAUGUUGCGCCaGUC- -5'
9384 5' -53.7 NC_002512.2 + 179556 0.67 0.97797
Target:  5'- gAUCUUCGGcUCGAUcuuCGGCGgCGG-CAGg -3'
miRNA:   3'- -UAGAGGCC-AGCUAu--GUUGC-GCCaGUC- -5'
9384 5' -53.7 NC_002512.2 + 152705 0.68 0.964048
Target:  5'- cGUCcCCGGUCGGggUGCGGCG-GG-CAGg -3'
miRNA:   3'- -UAGaGGCCAGCU--AUGUUGCgCCaGUC- -5'
9384 5' -53.7 NC_002512.2 + 152985 0.68 0.960656
Target:  5'- gGUCcCCGGUCGGgucgGCGGgaGCGGUCc- -3'
miRNA:   3'- -UAGaGGCCAGCUa---UGUUg-CGCCAGuc -5'
9384 5' -53.7 NC_002512.2 + 153035 0.68 0.960656
Target:  5'- gGUCcCCGGUCGGgucgGCGGgaGCGGUCc- -3'
miRNA:   3'- -UAGaGGCCAGCUa---UGUUg-CGCCAGuc -5'
9384 5' -53.7 NC_002512.2 + 169577 0.68 0.960656
Target:  5'- cGUCUCCGcGUCcgccaGGUACGACGacaGGUCc- -3'
miRNA:   3'- -UAGAGGC-CAG-----CUAUGUUGCg--CCAGuc -5'
9384 5' -53.7 NC_002512.2 + 154868 0.68 0.960306
Target:  5'- cGUCcCCGGcccucgaUCGGUGCGACGCGcGUguGc -3'
miRNA:   3'- -UAGaGGCC-------AGCUAUGUUGCGC-CAguC- -5'
9384 5' -53.7 NC_002512.2 + 189518 0.68 0.95705
Target:  5'- -gCUCCGGgccCGGgcuCGcCGCGGUCGGc -3'
miRNA:   3'- uaGAGGCCa--GCUau-GUuGCGCCAGUC- -5'
9384 5' -53.7 NC_002512.2 + 152888 0.68 0.953225
Target:  5'- gGUCcCCGGUCGGUgaACGGgaGCGGUCc- -3'
miRNA:   3'- -UAGaGGCCAGCUA--UGUUg-CGCCAGuc -5'
9384 5' -53.7 NC_002512.2 + 153777 0.68 0.952831
Target:  5'- --aUCCGGUCGGaGCAguACGgaauaucCGGUCAGg -3'
miRNA:   3'- uagAGGCCAGCUaUGU--UGC-------GCCAGUC- -5'
9384 5' -53.7 NC_002512.2 + 168956 0.69 0.940399
Target:  5'- cUCUCCGacgCGAaGCGcuuCGCGGUCGGu -3'
miRNA:   3'- uAGAGGCca-GCUaUGUu--GCGCCAGUC- -5'
9384 5' -53.7 NC_002512.2 + 8353 0.7 0.888771
Target:  5'- gGUUUUCGGUCGuUGCAAccuguuuCGCGGUCGc -3'
miRNA:   3'- -UAGAGGCCAGCuAUGUU-------GCGCCAGUc -5'
9384 5' -53.7 NC_002512.2 + 226754 0.71 0.882642
Target:  5'- -gCUCCGGcCGG-ACGACGCGGagGGc -3'
miRNA:   3'- uaGAGGCCaGCUaUGUUGCGCCagUC- -5'
9384 5' -53.7 NC_002512.2 + 152936 0.72 0.820882
Target:  5'- gGUCcCCGGUCGGU-CAGCGggagcggucccCGGUCGGg -3'
miRNA:   3'- -UAGaGGCCAGCUAuGUUGC-----------GCCAGUC- -5'
9384 5' -53.7 NC_002512.2 + 178237 0.74 0.729241
Target:  5'- gGUCUCCGGgg---ACGGCGCGGUCu- -3'
miRNA:   3'- -UAGAGGCCagcuaUGUUGCGCCAGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.