Results 21 - 40 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9385 | 3' | -53.2 | NC_002512.2 | + | 170085 | 0.66 | 0.992749 |
Target: 5'- gCCUGGCCUG-CuucuuGGGCAGcuuguacuGCAGCcGCc -3' miRNA: 3'- -GGACUGGGCuGu----UCUGUC--------UGUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 113271 | 0.66 | 0.992749 |
Target: 5'- --gGGCggCCGGCGGGGCAGccGCGGCggGCc -3' miRNA: 3'- ggaCUG--GGCUGUUCUGUC--UGUCGa-CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 202656 | 0.66 | 0.992749 |
Target: 5'- gCCcGGCCCGcucccuCAGGGCAcGGCGGCg-- -3' miRNA: 3'- -GGaCUGGGCu-----GUUCUGU-CUGUCGacg -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 135176 | 0.66 | 0.992551 |
Target: 5'- gCCUGcgcCCCGcgcaccGCGAGcugucgcacgaGGGCAGCUGCg -3' miRNA: 3'- -GGACu--GGGC------UGUUCug---------UCUGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 190921 | 0.66 | 0.992348 |
Target: 5'- --gGACCUGACGAGGCAG-CGGaaccagacccggGCg -3' miRNA: 3'- ggaCUGGGCUGUUCUGUCuGUCga----------CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 204878 | 0.66 | 0.991715 |
Target: 5'- --cGACCgaCGGCGAGcucuCGGACGGCgaGCg -3' miRNA: 3'- ggaCUGG--GCUGUUCu---GUCUGUCGa-CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 101868 | 0.66 | 0.991715 |
Target: 5'- --cGACCCGGCc--GCAG-CAGCcGCg -3' miRNA: 3'- ggaCUGGGCUGuucUGUCuGUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 105698 | 0.66 | 0.991715 |
Target: 5'- cUCUGucCCCGGC-GGACGaGCAGCcaggUGCa -3' miRNA: 3'- -GGACu-GGGCUGuUCUGUcUGUCG----ACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 94907 | 0.66 | 0.991715 |
Target: 5'- --cGuCCCGGuCGccGGGCAGACAGCUcCg -3' miRNA: 3'- ggaCuGGGCU-GU--UCUGUCUGUCGAcG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 110272 | 0.66 | 0.991715 |
Target: 5'- --cGACCCgGugGAGuACuuccuGGAcCAGCUGCg -3' miRNA: 3'- ggaCUGGG-CugUUC-UG-----UCU-GUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 149236 | 0.66 | 0.991715 |
Target: 5'- aCCgacgGACCCGGCGccgccgccGCGGACGGCcGg -3' miRNA: 3'- -GGa---CUGGGCUGUuc------UGUCUGUCGaCg -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 185612 | 0.66 | 0.991715 |
Target: 5'- uCCUGGCCaaCGGCGucccguGuCGGuGCAGCUGUc -3' miRNA: 3'- -GGACUGG--GCUGUu-----CuGUC-UGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 126648 | 0.67 | 0.980853 |
Target: 5'- cCCUcGCCgCGGCcgucGACGGGCGGCgacGCg -3' miRNA: 3'- -GGAcUGG-GCUGuu--CUGUCUGUCGa--CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 131132 | 0.67 | 0.982848 |
Target: 5'- gCCagGACCCGaugGCGGGGCAGgGCGGCc-- -3' miRNA: 3'- -GGa-CUGGGC---UGUUCUGUC-UGUCGacg -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 118308 | 0.67 | 0.982848 |
Target: 5'- aCCUGcaguacAUCCgggugGACGGGACGGACGcGCUGg -3' miRNA: 3'- -GGAC------UGGG-----CUGUUCUGUCUGU-CGACg -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 119448 | 0.67 | 0.984149 |
Target: 5'- -aUGAUCCGGCAGaucucggacaucguGGCGGAgCAGCcGCu -3' miRNA: 3'- ggACUGGGCUGUU--------------CUGUCU-GUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 120726 | 0.67 | 0.984683 |
Target: 5'- uCCcGGCCCcgcGCGAGAacGugAGCUGCc -3' miRNA: 3'- -GGaCUGGGc--UGUUCUguCugUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 157147 | 0.67 | 0.984683 |
Target: 5'- --gGGCCCG---GGGCGGGCGGCggGCc -3' miRNA: 3'- ggaCUGGGCuguUCUGUCUGUCGa-CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 228303 | 0.67 | 0.984683 |
Target: 5'- --gGACCCGGgGcGGGgGGACgAGCUGUa -3' miRNA: 3'- ggaCUGGGCUgU-UCUgUCUG-UCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 41341 | 0.67 | 0.980853 |
Target: 5'- aCCgGAUCCGAC-GGACGaagaacgacgucGACAGC-GCg -3' miRNA: 3'- -GGaCUGGGCUGuUCUGU------------CUGUCGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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