miRNA display CGI


Results 61 - 80 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9385 3' -53.2 NC_002512.2 + 124315 0.68 0.97635
Target:  5'- gCUGAUCgGGgcCGcGGCGGACGuGCUGCg -3'
miRNA:   3'- gGACUGGgCU--GUuCUGUCUGU-CGACG- -5'
9385 3' -53.2 NC_002512.2 + 195124 0.68 0.97635
Target:  5'- gUUGACCCGG-GGGAgAGGCGGUgucGCg -3'
miRNA:   3'- gGACUGGGCUgUUCUgUCUGUCGa--CG- -5'
9385 3' -53.2 NC_002512.2 + 115246 0.68 0.973828
Target:  5'- --cGACCCGACcaccuacacGAUAGGCGGCggggaGCg -3'
miRNA:   3'- ggaCUGGGCUGuu-------CUGUCUGUCGa----CG- -5'
9385 3' -53.2 NC_002512.2 + 227612 0.68 0.973828
Target:  5'- --cGGCCgGA--GGGCGGGCGGCgGCg -3'
miRNA:   3'- ggaCUGGgCUguUCUGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 190108 0.68 0.973828
Target:  5'- aCCUcAUCCGGCGcuucCAcGGCAGCUGCg -3'
miRNA:   3'- -GGAcUGGGCUGUucu-GU-CUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 105391 0.69 0.941917
Target:  5'- --cGACCCGGCGAcGCucuuGGGCGGCaGCa -3'
miRNA:   3'- ggaCUGGGCUGUUcUG----UCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 216234 0.69 0.941917
Target:  5'- gCUGgaGCCgCGGCGAGACGGucgucauCAGgUGCg -3'
miRNA:   3'- gGAC--UGG-GCUGUUCUGUCu------GUCgACG- -5'
9385 3' -53.2 NC_002512.2 + 116511 0.69 0.945906
Target:  5'- gCUGGCCCuggugcgguacacGGcCAAGACGuGcCAGCUGCu -3'
miRNA:   3'- gGACUGGG-------------CU-GUUCUGU-CuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 122323 0.69 0.945906
Target:  5'- aCgUGGCCCugaGGCGggGGACGGACaacguccuccagaAGCUGCc -3'
miRNA:   3'- -GgACUGGG---CUGU--UCUGUCUG-------------UCGACG- -5'
9385 3' -53.2 NC_002512.2 + 207383 0.69 0.9545
Target:  5'- --cGuCCCcACGAuGAUGGACGGCUGCu -3'
miRNA:   3'- ggaCuGGGcUGUU-CUGUCUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 220666 0.69 0.956026
Target:  5'- aCCUGGCCCGccGCGucgugcugggcgacgGGACGGAgguCAGUcccUGCg -3'
miRNA:   3'- -GGACUGGGC--UGU---------------UCUGUCU---GUCG---ACG- -5'
9385 3' -53.2 NC_002512.2 + 103326 0.69 0.958248
Target:  5'- gCCgaGGCCCGGgcggcguagccCGGGGCGGACGGCa-- -3'
miRNA:   3'- -GGa-CUGGGCU-----------GUUCUGUCUGUCGacg -5'
9385 3' -53.2 NC_002512.2 + 158984 0.7 0.916343
Target:  5'- --cGGCCaCGGCGGGGCggAGGCGGCgGCc -3'
miRNA:   3'- ggaCUGG-GCUGUUCUG--UCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 161823 0.7 0.916343
Target:  5'- aCCUGGCCCucugcuccGACGAGGCuuccGGACAcgGCgucgGCg -3'
miRNA:   3'- -GGACUGGG--------CUGUUCUG----UCUGU--CGa---CG- -5'
9385 3' -53.2 NC_002512.2 + 105641 0.7 0.929343
Target:  5'- uCCgaGACCCGGcCGAGguagggcgagccgcaGCAGACGGC-GCg -3'
miRNA:   3'- -GGa-CUGGGCU-GUUC---------------UGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 211931 0.7 0.929343
Target:  5'- --gGAcCCCGACGGGACguccguggacgagagGGuCGGCUGCu -3'
miRNA:   3'- ggaCU-GGGCUGUUCUG---------------UCuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 137235 0.7 0.932384
Target:  5'- cCCgGuCCCGACgAGGACAccGGCGGCgaGCg -3'
miRNA:   3'- -GGaCuGGGCUG-UUCUGU--CUGUCGa-CG- -5'
9385 3' -53.2 NC_002512.2 + 92606 0.7 0.932384
Target:  5'- cCCgaGGCCggucgCGACGacGGACGGACGGCgGCc -3'
miRNA:   3'- -GGa-CUGG-----GCUGU--UCUGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 205706 0.71 0.904492
Target:  5'- --cGACaCCGGC--GACAGGCGGCgGCa -3'
miRNA:   3'- ggaCUG-GGCUGuuCUGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 171819 0.71 0.898224
Target:  5'- uCCUGcuGCCCGGCAuccgguaccgcgGGACGGucCGGCcGCg -3'
miRNA:   3'- -GGAC--UGGGCUGU------------UCUGUCu-GUCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.