Results 61 - 80 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9385 | 3' | -53.2 | NC_002512.2 | + | 120726 | 0.67 | 0.984683 |
Target: 5'- uCCcGGCCCcgcGCGAGAacGugAGCUGCc -3' miRNA: 3'- -GGaCUGGGc--UGUUCUguCugUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 157147 | 0.67 | 0.984683 |
Target: 5'- --gGGCCCG---GGGCGGGCGGCggGCc -3' miRNA: 3'- ggaCUGGGCuguUCUGUCUGUCGa-CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 228303 | 0.67 | 0.984683 |
Target: 5'- --gGACCCGGgGcGGGgGGACgAGCUGUa -3' miRNA: 3'- ggaCUGGGCUgU-UCUgUCUG-UCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 117292 | 0.67 | 0.986202 |
Target: 5'- aCCUGAacgacuuCCCG-CAcuaccaccGGACGGACGGCggGUu -3' miRNA: 3'- -GGACU-------GGGCuGU--------UCUGUCUGUCGa-CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 82431 | 0.67 | 0.97869 |
Target: 5'- --aGACCa-GCAGcGACAGACGGCcGCc -3' miRNA: 3'- ggaCUGGgcUGUU-CUGUCUGUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 131132 | 0.67 | 0.982848 |
Target: 5'- gCCagGACCCGaugGCGGGGCAGgGCGGCc-- -3' miRNA: 3'- -GGa-CUGGGC---UGUUCUGUC-UGUCGacg -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 126648 | 0.67 | 0.980853 |
Target: 5'- cCCUcGCCgCGGCcgucGACGGGCGGCgacGCg -3' miRNA: 3'- -GGAcUGG-GCUGuu--CUGUCUGUCGa--CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 100913 | 0.67 | 0.980853 |
Target: 5'- --aGGCCCGGCGguaggaAGACAGGCcggagaagucccAGCcGCg -3' miRNA: 3'- ggaCUGGGCUGU------UCUGUCUG------------UCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 100991 | 0.67 | 0.97869 |
Target: 5'- --cGACCaCGuuGugucGCAGACAGCUGCc -3' miRNA: 3'- ggaCUGG-GCugUuc--UGUCUGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 110681 | 0.67 | 0.97869 |
Target: 5'- uCCUGguGCUCGcgcagccgccGCAGGGCcaGGGcCAGCUGCa -3' miRNA: 3'- -GGAC--UGGGC----------UGUUCUG--UCU-GUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 224132 | 0.67 | 0.980853 |
Target: 5'- gCCgugGACCCGcGCcggGAGGCGGACGcGUgagGCg -3' miRNA: 3'- -GGa--CUGGGC-UG---UUCUGUCUGU-CGa--CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 212560 | 0.67 | 0.97869 |
Target: 5'- -aUGACgaCGACGGGGCGacgacGACGGCgGCg -3' miRNA: 3'- ggACUGg-GCUGUUCUGU-----CUGUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 223449 | 0.67 | 0.97869 |
Target: 5'- cCCUGuCUCGGCGcccGcCAGACGGCcGCc -3' miRNA: 3'- -GGACuGGGCUGUu--CuGUCUGUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 110069 | 0.67 | 0.980222 |
Target: 5'- gCCUGcaacaucaagcacaACCUGGCGcagAGGcCGGuGCAGCUGCu -3' miRNA: 3'- -GGAC--------------UGGGCUGU---UCU-GUC-UGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 195343 | 0.67 | 0.980853 |
Target: 5'- gCgUGACCCGGCGccgGGAaccccgggugcUGGuCGGCUGCc -3' miRNA: 3'- -GgACUGGGCUGU---UCU-----------GUCuGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 135464 | 0.67 | 0.980853 |
Target: 5'- uCCUGAUggaauaCGACGAGGUAGGCGGCa-- -3' miRNA: 3'- -GGACUGg-----GCUGUUCUGUCUGUCGacg -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 158687 | 0.66 | 0.987899 |
Target: 5'- -aUGGCCgGcCGGGACGGGgAGgUGCc -3' miRNA: 3'- ggACUGGgCuGUUCUGUCUgUCgACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 179303 | 0.66 | 0.987899 |
Target: 5'- uCCaGuCCgcgggCGGCGAGGCGGGCAGaucCUGCa -3' miRNA: 3'- -GGaCuGG-----GCUGUUCUGUCUGUC---GACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 132166 | 0.66 | 0.989164 |
Target: 5'- -gUGAgCgCGGCGucgugagcgggauAGACGGuCAGCUGCu -3' miRNA: 3'- ggACUgG-GCUGU-------------UCUGUCuGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 117103 | 0.66 | 0.989164 |
Target: 5'- cCCUGgACCCGGCAcagcGGcACGGGgccccguCGGCgGCg -3' miRNA: 3'- -GGAC-UGGGCUGU----UC-UGUCU-------GUCGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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