miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9385 3' -53.2 NC_002512.2 + 207383 0.69 0.9545
Target:  5'- --cGuCCCcACGAuGAUGGACGGCUGCu -3'
miRNA:   3'- ggaCuGGGcUGUU-CUGUCUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 220666 0.69 0.956026
Target:  5'- aCCUGGCCCGccGCGucgugcugggcgacgGGACGGAgguCAGUcccUGCg -3'
miRNA:   3'- -GGACUGGGC--UGU---------------UCUGUCU---GUCG---ACG- -5'
9385 3' -53.2 NC_002512.2 + 103326 0.69 0.958248
Target:  5'- gCCgaGGCCCGGgcggcguagccCGGGGCGGACGGCa-- -3'
miRNA:   3'- -GGa-CUGGGCU-----------GUUCUGUCUGUCGacg -5'
9385 3' -53.2 NC_002512.2 + 181400 0.68 0.961779
Target:  5'- cCCUGGCCUccgccgggGACGcguucaGGAUGGccguCAGCUGCg -3'
miRNA:   3'- -GGACUGGG--------CUGU------UCUGUCu---GUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 89817 0.68 0.965097
Target:  5'- -aUGACgCCGAgAGGACgucgAGACcgcGCUGCa -3'
miRNA:   3'- ggACUG-GGCUgUUCUG----UCUGu--CGACG- -5'
9385 3' -53.2 NC_002512.2 + 128449 0.68 0.968207
Target:  5'- gCCaUGGCCCaGCAGGAaCAgcGACAGCgacaGCg -3'
miRNA:   3'- -GG-ACUGGGcUGUUCU-GU--CUGUCGa---CG- -5'
9385 3' -53.2 NC_002512.2 + 102099 0.68 0.968207
Target:  5'- --aGACUgGACAcgGGAgAGACAGgaGCu -3'
miRNA:   3'- ggaCUGGgCUGU--UCUgUCUGUCgaCG- -5'
9385 3' -53.2 NC_002512.2 + 211364 0.68 0.971115
Target:  5'- gCCUGaccGCCCGGCGcGGCAu---GCUGCg -3'
miRNA:   3'- -GGAC---UGGGCUGUuCUGUcuguCGACG- -5'
9385 3' -53.2 NC_002512.2 + 108634 0.68 0.971115
Target:  5'- uCCUGACCUGcaACGGGACccacgGGGCGGUccacaUGUa -3'
miRNA:   3'- -GGACUGGGC--UGUUCUG-----UCUGUCG-----ACG- -5'
9385 3' -53.2 NC_002512.2 + 91910 0.68 0.973828
Target:  5'- cCCgcucgGGCCCGGCAcgcaGGACAuccGCgAGCUGUu -3'
miRNA:   3'- -GGa----CUGGGCUGU----UCUGUc--UG-UCGACG- -5'
9385 3' -53.2 NC_002512.2 + 137058 0.68 0.973828
Target:  5'- --gGGCgUGAUgacgGAGGCGGGCAuGCUGCa -3'
miRNA:   3'- ggaCUGgGCUG----UUCUGUCUGU-CGACG- -5'
9385 3' -53.2 NC_002512.2 + 190108 0.68 0.973828
Target:  5'- aCCUcAUCCGGCGcuucCAcGGCAGCUGCg -3'
miRNA:   3'- -GGAcUGGGCUGUucu-GU-CUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 227612 0.68 0.973828
Target:  5'- --cGGCCgGA--GGGCGGGCGGCgGCg -3'
miRNA:   3'- ggaCUGGgCUguUCUGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 115246 0.68 0.973828
Target:  5'- --cGACCCGACcaccuacacGAUAGGCGGCggggaGCg -3'
miRNA:   3'- ggaCUGGGCUGuu-------CUGUCUGUCGa----CG- -5'
9385 3' -53.2 NC_002512.2 + 124315 0.68 0.97635
Target:  5'- gCUGAUCgGGgcCGcGGCGGACGuGCUGCg -3'
miRNA:   3'- gGACUGGgCU--GUuCUGUCUGU-CGACG- -5'
9385 3' -53.2 NC_002512.2 + 183981 0.68 0.97635
Target:  5'- ---cGCCUGuCGGGGCGGACAGCUc- -3'
miRNA:   3'- ggacUGGGCuGUUCUGUCUGUCGAcg -5'
9385 3' -53.2 NC_002512.2 + 195124 0.68 0.97635
Target:  5'- gUUGACCCGG-GGGAgAGGCGGUgucGCg -3'
miRNA:   3'- gGACUGGGCUgUUCUgUCUGUCGa--CG- -5'
9385 3' -53.2 NC_002512.2 + 82431 0.67 0.97869
Target:  5'- --aGACCa-GCAGcGACAGACGGCcGCc -3'
miRNA:   3'- ggaCUGGgcUGUU-CUGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 110681 0.67 0.97869
Target:  5'- uCCUGguGCUCGcgcagccgccGCAGGGCcaGGGcCAGCUGCa -3'
miRNA:   3'- -GGAC--UGGGC----------UGUUCUG--UCU-GUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 212560 0.67 0.97869
Target:  5'- -aUGACgaCGACGGGGCGacgacGACGGCgGCg -3'
miRNA:   3'- ggACUGg-GCUGUUCUGU-----CUGUCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.