miRNA display CGI


Results 61 - 80 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9385 3' -53.2 NC_002512.2 + 100991 0.67 0.97869
Target:  5'- --cGACCaCGuuGugucGCAGACAGCUGCc -3'
miRNA:   3'- ggaCUGG-GCugUuc--UGUCUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 110681 0.67 0.97869
Target:  5'- uCCUGguGCUCGcgcagccgccGCAGGGCcaGGGcCAGCUGCa -3'
miRNA:   3'- -GGAC--UGGGC----------UGUUCUG--UCU-GUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 110069 0.67 0.980222
Target:  5'- gCCUGcaacaucaagcacaACCUGGCGcagAGGcCGGuGCAGCUGCu -3'
miRNA:   3'- -GGAC--------------UGGGCUGU---UCU-GUC-UGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 41341 0.67 0.980853
Target:  5'- aCCgGAUCCGAC-GGACGaagaacgacgucGACAGC-GCg -3'
miRNA:   3'- -GGaCUGGGCUGuUCUGU------------CUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 100913 0.67 0.980853
Target:  5'- --aGGCCCGGCGguaggaAGACAGGCcggagaagucccAGCcGCg -3'
miRNA:   3'- ggaCUGGGCUGU------UCUGUCUG------------UCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 126648 0.67 0.980853
Target:  5'- cCCUcGCCgCGGCcgucGACGGGCGGCgacGCg -3'
miRNA:   3'- -GGAcUGG-GCUGuu--CUGUCUGUCGa--CG- -5'
9385 3' -53.2 NC_002512.2 + 195343 0.67 0.980853
Target:  5'- gCgUGACCCGGCGccgGGAaccccgggugcUGGuCGGCUGCc -3'
miRNA:   3'- -GgACUGGGCUGU---UCU-----------GUCuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 135464 0.67 0.980853
Target:  5'- uCCUGAUggaauaCGACGAGGUAGGCGGCa-- -3'
miRNA:   3'- -GGACUGg-----GCUGUUCUGUCUGUCGacg -5'
9385 3' -53.2 NC_002512.2 + 224132 0.67 0.980853
Target:  5'- gCCgugGACCCGcGCcggGAGGCGGACGcGUgagGCg -3'
miRNA:   3'- -GGa--CUGGGC-UG---UUCUGUCUGU-CGa--CG- -5'
9385 3' -53.2 NC_002512.2 + 131132 0.67 0.982848
Target:  5'- gCCagGACCCGaugGCGGGGCAGgGCGGCc-- -3'
miRNA:   3'- -GGa-CUGGGC---UGUUCUGUC-UGUCGacg -5'
9385 3' -53.2 NC_002512.2 + 118308 0.67 0.982848
Target:  5'- aCCUGcaguacAUCCgggugGACGGGACGGACGcGCUGg -3'
miRNA:   3'- -GGAC------UGGG-----CUGUUCUGUCUGU-CGACg -5'
9385 3' -53.2 NC_002512.2 + 119448 0.67 0.984149
Target:  5'- -aUGAUCCGGCAGaucucggacaucguGGCGGAgCAGCcGCu -3'
miRNA:   3'- ggACUGGGCUGUU--------------CUGUCU-GUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 228303 0.67 0.984683
Target:  5'- --gGACCCGGgGcGGGgGGACgAGCUGUa -3'
miRNA:   3'- ggaCUGGGCUgU-UCUgUCUG-UCGACG- -5'
9385 3' -53.2 NC_002512.2 + 157147 0.67 0.984683
Target:  5'- --gGGCCCG---GGGCGGGCGGCggGCc -3'
miRNA:   3'- ggaCUGGGCuguUCUGUCUGUCGa-CG- -5'
9385 3' -53.2 NC_002512.2 + 120726 0.67 0.984683
Target:  5'- uCCcGGCCCcgcGCGAGAacGugAGCUGCc -3'
miRNA:   3'- -GGaCUGGGc--UGUUCUguCugUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 117292 0.67 0.986202
Target:  5'- aCCUGAacgacuuCCCG-CAcuaccaccGGACGGACGGCggGUu -3'
miRNA:   3'- -GGACU-------GGGCuGU--------UCUGUCUGUCGa-CG- -5'
9385 3' -53.2 NC_002512.2 + 158687 0.66 0.987899
Target:  5'- -aUGGCCgGcCGGGACGGGgAGgUGCc -3'
miRNA:   3'- ggACUGGgCuGUUCUGUCUgUCgACG- -5'
9385 3' -53.2 NC_002512.2 + 179303 0.66 0.987899
Target:  5'- uCCaGuCCgcgggCGGCGAGGCGGGCAGaucCUGCa -3'
miRNA:   3'- -GGaCuGG-----GCUGUUCUGUCUGUC---GACG- -5'
9385 3' -53.2 NC_002512.2 + 100517 0.66 0.987899
Target:  5'- --aGcACCCGcACGAGACAGAaggcgacgacGCUGCc -3'
miRNA:   3'- ggaC-UGGGC-UGUUCUGUCUgu--------CGACG- -5'
9385 3' -53.2 NC_002512.2 + 132166 0.66 0.989164
Target:  5'- -gUGAgCgCGGCGucgugagcgggauAGACGGuCAGCUGCu -3'
miRNA:   3'- ggACUgG-GCUGU-------------UCUGUCuGUCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.