Results 81 - 100 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9385 | 3' | -53.2 | NC_002512.2 | + | 132166 | 0.66 | 0.989164 |
Target: 5'- -gUGAgCgCGGCGucgugagcgggauAGACGGuCAGCUGCu -3' miRNA: 3'- ggACUgG-GCUGU-------------UCUGUCuGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 115904 | 0.66 | 0.989298 |
Target: 5'- uCCggGACCUGGCGAGgagagaguacgaGCgAGACGGCaugGCc -3' miRNA: 3'- -GGa-CUGGGCUGUUC------------UG-UCUGUCGa--CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 120758 | 0.66 | 0.989298 |
Target: 5'- aCgUGGCCUGGaaggaGAGGCAGACccucAGCcugGCg -3' miRNA: 3'- -GgACUGGGCUg----UUCUGUCUG----UCGa--CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 204210 | 0.66 | 0.989298 |
Target: 5'- aCCUGcguUCCGACGAGGC--GCAGCg-- -3' miRNA: 3'- -GGACu--GGGCUGUUCUGucUGUCGacg -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 172576 | 0.66 | 0.989298 |
Target: 5'- uCCUccgcGCCCG-CGAGuACgAGAcCGGCUGCg -3' miRNA: 3'- -GGAc---UGGGCuGUUC-UG-UCU-GUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 222723 | 0.66 | 0.990567 |
Target: 5'- aCCUG-CCUG-CuGGACGGcaacggcCAGCUGCu -3' miRNA: 3'- -GGACuGGGCuGuUCUGUCu------GUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 228536 | 0.66 | 0.990567 |
Target: 5'- --cGACgagaCGACAcgggAGGCGGACGGCaGCc -3' miRNA: 3'- ggaCUGg---GCUGU----UCUGUCUGUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 212143 | 0.66 | 0.990567 |
Target: 5'- aCCUGugCguCGGCGGGcACuggcggcgGGACGGCUGg -3' miRNA: 3'- -GGACugG--GCUGUUC-UG--------UCUGUCGACg -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 192086 | 0.66 | 0.990567 |
Target: 5'- cCCUGACCCagaGCgAGGGCGGcgucauguuccACGGgaGCg -3' miRNA: 3'- -GGACUGGGc--UG-UUCUGUC-----------UGUCgaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 191469 | 0.66 | 0.990567 |
Target: 5'- -gUGGgCCGAguaCGAGGCgccGGACAGCgcgGCg -3' miRNA: 3'- ggACUgGGCU---GUUCUG---UCUGUCGa--CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 191076 | 0.66 | 0.990567 |
Target: 5'- gCUGGCUgugCGGCAaguggggguGGAUGGugGGUUGCu -3' miRNA: 3'- gGACUGG---GCUGU---------UCUGUCugUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 130505 | 0.66 | 0.990567 |
Target: 5'- uCCgGAcCCCGACGcuGGCGGAgAGCUcgggucGCg -3' miRNA: 3'- -GGaCU-GGGCUGUu-CUGUCUgUCGA------CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 223393 | 0.66 | 0.991605 |
Target: 5'- uCCUGAgCCUGGacgucguCAAGAaguuCAGCUGCg -3' miRNA: 3'- -GGACU-GGGCU-------GUUCUgucuGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 204878 | 0.66 | 0.991715 |
Target: 5'- --cGACCgaCGGCGAGcucuCGGACGGCgaGCg -3' miRNA: 3'- ggaCUGG--GCUGUUCu---GUCUGUCGa-CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 185612 | 0.66 | 0.991715 |
Target: 5'- uCCUGGCCaaCGGCGucccguGuCGGuGCAGCUGUc -3' miRNA: 3'- -GGACUGG--GCUGUu-----CuGUC-UGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 149236 | 0.66 | 0.991715 |
Target: 5'- aCCgacgGACCCGGCGccgccgccGCGGACGGCcGg -3' miRNA: 3'- -GGa---CUGGGCUGUuc------UGUCUGUCGaCg -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 110272 | 0.66 | 0.991715 |
Target: 5'- --cGACCCgGugGAGuACuuccuGGAcCAGCUGCg -3' miRNA: 3'- ggaCUGGG-CugUUC-UG-----UCU-GUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 105698 | 0.66 | 0.991715 |
Target: 5'- cUCUGucCCCGGC-GGACGaGCAGCcaggUGCa -3' miRNA: 3'- -GGACu-GGGCUGuUCUGUcUGUCG----ACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 101868 | 0.66 | 0.991715 |
Target: 5'- --cGACCCGGCc--GCAG-CAGCcGCg -3' miRNA: 3'- ggaCUGGGCUGuucUGUCuGUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 94907 | 0.66 | 0.991715 |
Target: 5'- --cGuCCCGGuCGccGGGCAGACAGCUcCg -3' miRNA: 3'- ggaCuGGGCU-GU--UCUGUCUGUCGAcG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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