Results 101 - 108 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9385 | 3' | -53.2 | NC_002512.2 | + | 190921 | 0.66 | 0.992348 |
Target: 5'- --gGACCUGACGAGGCAG-CGGaaccagacccggGCg -3' miRNA: 3'- ggaCUGGGCUGUUCUGUCuGUCga----------CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 135176 | 0.66 | 0.992551 |
Target: 5'- gCCUGcgcCCCGcgcaccGCGAGcugucgcacgaGGGCAGCUGCg -3' miRNA: 3'- -GGACu--GGGC------UGUUCug---------UCUGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 202656 | 0.66 | 0.992749 |
Target: 5'- gCCcGGCCCGcucccuCAGGGCAcGGCGGCg-- -3' miRNA: 3'- -GGaCUGGGCu-----GUUCUGU-CUGUCGacg -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 113271 | 0.66 | 0.992749 |
Target: 5'- --gGGCggCCGGCGGGGCAGccGCGGCggGCc -3' miRNA: 3'- ggaCUG--GGCUGUUCUGUC--UGUCGa-CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 170085 | 0.66 | 0.992749 |
Target: 5'- gCCUGGCCUG-CuucuuGGGCAGcuuguacuGCAGCcGCc -3' miRNA: 3'- -GGACUGGGCuGu----UCUGUC--------UGUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 185365 | 0.66 | 0.992749 |
Target: 5'- gCCgucGACUgCGACAccuucGGCGG-CGGCUGCg -3' miRNA: 3'- -GGa--CUGG-GCUGUu----CUGUCuGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 88996 | 0.66 | 0.992749 |
Target: 5'- --cGACCCGgagcGCGGGGacguCGGGCAGC-GCg -3' miRNA: 3'- ggaCUGGGC----UGUUCU----GUCUGUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 116735 | 0.66 | 0.992749 |
Target: 5'- aCgUGGCCCGGCugauggcgauGGAcCAGGcCAGCcGCu -3' miRNA: 3'- -GgACUGGGCUGu---------UCU-GUCU-GUCGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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