Results 81 - 100 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9385 | 3' | -53.2 | NC_002512.2 | + | 171819 | 0.71 | 0.898224 |
Target: 5'- uCCUGcuGCCCGGCAuccgguaccgcgGGACGGucCGGCcGCg -3' miRNA: 3'- -GGAC--UGGGCUGU------------UCUGUCu-GUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 147609 | 0.71 | 0.891731 |
Target: 5'- gCCUcGACCCGACccucgacgGGGGCGacgacGACGGCgGCg -3' miRNA: 3'- -GGA-CUGGGCUG--------UUCUGU-----CUGUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 115525 | 0.71 | 0.89107 |
Target: 5'- gCUGACCUucACGcAGACGGACAuggacguGCUGCg -3' miRNA: 3'- gGACUGGGc-UGU-UCUGUCUGU-------CGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 114882 | 0.71 | 0.878084 |
Target: 5'- gCCUGACCCaccuGAagGAGACguucgaGGACAcGCUGCu -3' miRNA: 3'- -GGACUGGG----CUg-UUCUG------UCUGU-CGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 205662 | 0.72 | 0.870939 |
Target: 5'- --gGGCCCGACGccuCGGACAGCUccgGCg -3' miRNA: 3'- ggaCUGGGCUGUucuGUCUGUCGA---CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 216659 | 0.72 | 0.863585 |
Target: 5'- --cGuCCCG-CAGcACGGGCAGCUGCa -3' miRNA: 3'- ggaCuGGGCuGUUcUGUCUGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 160819 | 0.72 | 0.856028 |
Target: 5'- gCCgc-CCCGGCAccagcAGGCGGGCGGCcgGCg -3' miRNA: 3'- -GGacuGGGCUGU-----UCUGUCUGUCGa-CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 92990 | 0.72 | 0.851399 |
Target: 5'- gCCcGACCUgguggccgucucgguGGC-GGACGGGCAGCUGUg -3' miRNA: 3'- -GGaCUGGG---------------CUGuUCUGUCUGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 190073 | 0.72 | 0.848274 |
Target: 5'- gCUGGCCgCGGCcGGucaGCGGGCucGGCUGCg -3' miRNA: 3'- gGACUGG-GCUGuUC---UGUCUG--UCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 211741 | 0.73 | 0.823894 |
Target: 5'- gCCUGGCCCgcGACGcGGCccGGGC-GCUGCg -3' miRNA: 3'- -GGACUGGG--CUGUuCUG--UCUGuCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 124866 | 0.73 | 0.806782 |
Target: 5'- --gGACCCgGACGAGAacCGGGCGGCgGCc -3' miRNA: 3'- ggaCUGGG-CUGUUCU--GUCUGUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 92459 | 0.73 | 0.806782 |
Target: 5'- aCUGGCCCacgugguguACGAGACgAGcCGGCUGCa -3' miRNA: 3'- gGACUGGGc--------UGUUCUG-UCuGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 144028 | 0.73 | 0.79799 |
Target: 5'- aCUGGCUCGACAgaAGGCggucuAGGCGGgaGCg -3' miRNA: 3'- gGACUGGGCUGU--UCUG-----UCUGUCgaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 117864 | 0.73 | 0.797103 |
Target: 5'- uCCUGACguucggCCG-CAAGACGGACGccgggggcccgucGCUGCu -3' miRNA: 3'- -GGACUG------GGCuGUUCUGUCUGU-------------CGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 119273 | 0.74 | 0.789053 |
Target: 5'- gCUGGCCCuGgAGGACAGcaGCAuGCUGCu -3' miRNA: 3'- gGACUGGGcUgUUCUGUC--UGU-CGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 126750 | 0.74 | 0.779064 |
Target: 5'- uCUUGGCCCGAgacgccuCGGGGCGcGGCGGCgGCg -3' miRNA: 3'- -GGACUGGGCU-------GUUCUGU-CUGUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 194301 | 0.74 | 0.774472 |
Target: 5'- uCC-GACCCGACAGGucACcuuccucguggcccgGGACGGUUGCg -3' miRNA: 3'- -GGaCUGGGCUGUUC--UG---------------UCUGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 157387 | 0.74 | 0.770775 |
Target: 5'- --gGACCgGACGAGAUcGcCGGCUGCa -3' miRNA: 3'- ggaCUGGgCUGUUCUGuCuGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 92065 | 0.74 | 0.770775 |
Target: 5'- cCCUGGaaCGcuACGAGACGGACGGCcGCc -3' miRNA: 3'- -GGACUggGC--UGUUCUGUCUGUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 119843 | 0.74 | 0.770775 |
Target: 5'- uCCUucGACCCGuACGAGACGa--AGCUGCu -3' miRNA: 3'- -GGA--CUGGGC-UGUUCUGUcugUCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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