miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9385 3' -53.2 NC_002512.2 + 120726 0.67 0.984683
Target:  5'- uCCcGGCCCcgcGCGAGAacGugAGCUGCc -3'
miRNA:   3'- -GGaCUGGGc--UGUUCUguCugUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 120758 0.66 0.989298
Target:  5'- aCgUGGCCUGGaaggaGAGGCAGACccucAGCcugGCg -3'
miRNA:   3'- -GgACUGGGCUg----UUCUGUCUG----UCGa--CG- -5'
9385 3' -53.2 NC_002512.2 + 120933 0.74 0.761452
Target:  5'- cCCgggcGACCCGACGGGcaagggcgGCGGuaacCGGCUGCa -3'
miRNA:   3'- -GGa---CUGGGCUGUUC--------UGUCu---GUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 122323 0.69 0.945906
Target:  5'- aCgUGGCCCugaGGCGggGGACGGACaacguccuccagaAGCUGCc -3'
miRNA:   3'- -GgACUGGG---CUGU--UCUGUCUG-------------UCGACG- -5'
9385 3' -53.2 NC_002512.2 + 123155 0.78 0.533486
Target:  5'- gCCgGGgCCGAgGAGGCGGACAGgaGCg -3'
miRNA:   3'- -GGaCUgGGCUgUUCUGUCUGUCgaCG- -5'
9385 3' -53.2 NC_002512.2 + 124315 0.68 0.97635
Target:  5'- gCUGAUCgGGgcCGcGGCGGACGuGCUGCg -3'
miRNA:   3'- gGACUGGgCU--GUuCUGUCUGU-CGACG- -5'
9385 3' -53.2 NC_002512.2 + 124866 0.73 0.806782
Target:  5'- --gGACCCgGACGAGAacCGGGCGGCgGCc -3'
miRNA:   3'- ggaCUGGG-CUGUUCU--GUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 126648 0.67 0.980853
Target:  5'- cCCUcGCCgCGGCcgucGACGGGCGGCgacGCg -3'
miRNA:   3'- -GGAcUGG-GCUGuu--CUGUCUGUCGa--CG- -5'
9385 3' -53.2 NC_002512.2 + 126750 0.74 0.779064
Target:  5'- uCUUGGCCCGAgacgccuCGGGGCGcGGCGGCgGCg -3'
miRNA:   3'- -GGACUGGGCU-------GUUCUGU-CUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 128449 0.68 0.968207
Target:  5'- gCCaUGGCCCaGCAGGAaCAgcGACAGCgacaGCg -3'
miRNA:   3'- -GG-ACUGGGcUGUUCU-GU--CUGUCGa---CG- -5'
9385 3' -53.2 NC_002512.2 + 130505 0.66 0.990567
Target:  5'- uCCgGAcCCCGACGcuGGCGGAgAGCUcgggucGCg -3'
miRNA:   3'- -GGaCU-GGGCUGUu-CUGUCUgUCGA------CG- -5'
9385 3' -53.2 NC_002512.2 + 131132 0.67 0.982848
Target:  5'- gCCagGACCCGaugGCGGGGCAGgGCGGCc-- -3'
miRNA:   3'- -GGa-CUGGGC---UGUUCUGUC-UGUCGacg -5'
9385 3' -53.2 NC_002512.2 + 132166 0.66 0.989164
Target:  5'- -gUGAgCgCGGCGucgugagcgggauAGACGGuCAGCUGCu -3'
miRNA:   3'- ggACUgG-GCUGU-------------UCUGUCuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 135176 0.66 0.992551
Target:  5'- gCCUGcgcCCCGcgcaccGCGAGcugucgcacgaGGGCAGCUGCg -3'
miRNA:   3'- -GGACu--GGGC------UGUUCug---------UCUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 135464 0.67 0.980853
Target:  5'- uCCUGAUggaauaCGACGAGGUAGGCGGCa-- -3'
miRNA:   3'- -GGACUGg-----GCUGUUCUGUCUGUCGacg -5'
9385 3' -53.2 NC_002512.2 + 137058 0.68 0.973828
Target:  5'- --gGGCgUGAUgacgGAGGCGGGCAuGCUGCa -3'
miRNA:   3'- ggaCUGgGCUG----UUCUGUCUGU-CGACG- -5'
9385 3' -53.2 NC_002512.2 + 137235 0.7 0.932384
Target:  5'- cCCgGuCCCGACgAGGACAccGGCGGCgaGCg -3'
miRNA:   3'- -GGaCuGGGCUG-UUCUGU--CUGUCGa-CG- -5'
9385 3' -53.2 NC_002512.2 + 144028 0.73 0.79799
Target:  5'- aCUGGCUCGACAgaAGGCggucuAGGCGGgaGCg -3'
miRNA:   3'- gGACUGGGCUGU--UCUG-----UCUGUCgaCG- -5'
9385 3' -53.2 NC_002512.2 + 147609 0.71 0.891731
Target:  5'- gCCUcGACCCGACccucgacgGGGGCGacgacGACGGCgGCg -3'
miRNA:   3'- -GGA-CUGGGCUG--------UUCUGU-----CUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 149236 0.66 0.991715
Target:  5'- aCCgacgGACCCGGCGccgccgccGCGGACGGCcGg -3'
miRNA:   3'- -GGa---CUGGGCUGUuc------UGUCUGUCGaCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.