Results 81 - 100 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9385 | 3' | -53.2 | NC_002512.2 | + | 194301 | 0.74 | 0.774472 |
Target: 5'- uCC-GACCCGACAGGucACcuuccucguggcccgGGACGGUUGCg -3' miRNA: 3'- -GGaCUGGGCUGUUC--UG---------------UCUGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 195124 | 0.68 | 0.97635 |
Target: 5'- gUUGACCCGG-GGGAgAGGCGGUgucGCg -3' miRNA: 3'- gGACUGGGCUgUUCUgUCUGUCGa--CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 195343 | 0.67 | 0.980853 |
Target: 5'- gCgUGACCCGGCGccgGGAaccccgggugcUGGuCGGCUGCc -3' miRNA: 3'- -GgACUGGGCUGU---UCU-----------GUCuGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 197659 | 0.71 | 0.910533 |
Target: 5'- cUCUGGCCCGACGAGGUGGAC-GCc-- -3' miRNA: 3'- -GGACUGGGCUGUUCUGUCUGuCGacg -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 202656 | 0.66 | 0.992749 |
Target: 5'- gCCcGGCCCGcucccuCAGGGCAcGGCGGCg-- -3' miRNA: 3'- -GGaCUGGGCu-----GUUCUGU-CUGUCGacg -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 204210 | 0.66 | 0.989298 |
Target: 5'- aCCUGcguUCCGACGAGGC--GCAGCg-- -3' miRNA: 3'- -GGACu--GGGCUGUUCUGucUGUCGacg -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 204878 | 0.66 | 0.991715 |
Target: 5'- --cGACCgaCGGCGAGcucuCGGACGGCgaGCg -3' miRNA: 3'- ggaCUGG--GCUGUUCu---GUCUGUCGa-CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 205662 | 0.72 | 0.870939 |
Target: 5'- --gGGCCCGACGccuCGGACAGCUccgGCg -3' miRNA: 3'- ggaCUGGGCUGUucuGUCUGUCGA---CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 205706 | 0.71 | 0.904492 |
Target: 5'- --cGACaCCGGC--GACAGGCGGCgGCa -3' miRNA: 3'- ggaCUG-GGCUGuuCUGUCUGUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 207383 | 0.69 | 0.9545 |
Target: 5'- --cGuCCCcACGAuGAUGGACGGCUGCu -3' miRNA: 3'- ggaCuGGGcUGUU-CUGUCUGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 207594 | 0.78 | 0.533486 |
Target: 5'- cCCUGGCCUG-CGAcGGCGG-CGGCUGCu -3' miRNA: 3'- -GGACUGGGCuGUU-CUGUCuGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 209625 | 0.79 | 0.504514 |
Target: 5'- aCCUGcgGCCgGACgAGGACGacGACGGCUGCg -3' miRNA: 3'- -GGAC--UGGgCUG-UUCUGU--CUGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 211364 | 0.68 | 0.971115 |
Target: 5'- gCCUGaccGCCCGGCGcGGCAu---GCUGCg -3' miRNA: 3'- -GGAC---UGGGCUGUuCUGUcuguCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 211741 | 0.73 | 0.823894 |
Target: 5'- gCCUGGCCCgcGACGcGGCccGGGC-GCUGCg -3' miRNA: 3'- -GGACUGGG--CUGUuCUG--UCUGuCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 211931 | 0.7 | 0.929343 |
Target: 5'- --gGAcCCCGACGGGACguccguggacgagagGGuCGGCUGCu -3' miRNA: 3'- ggaCU-GGGCUGUUCUG---------------UCuGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 212143 | 0.66 | 0.990567 |
Target: 5'- aCCUGugCguCGGCGGGcACuggcggcgGGACGGCUGg -3' miRNA: 3'- -GGACugG--GCUGUUC-UG--------UCUGUCGACg -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 212560 | 0.67 | 0.97869 |
Target: 5'- -aUGACgaCGACGGGGCGacgacGACGGCgGCg -3' miRNA: 3'- ggACUGg-GCUGUUCUGU-----CUGUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 216234 | 0.69 | 0.941917 |
Target: 5'- gCUGgaGCCgCGGCGAGACGGucgucauCAGgUGCg -3' miRNA: 3'- gGAC--UGG-GCUGUUCUGUCu------GUCgACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 216659 | 0.72 | 0.863585 |
Target: 5'- --cGuCCCG-CAGcACGGGCAGCUGCa -3' miRNA: 3'- ggaCuGGGCuGUUcUGUCUGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 220666 | 0.69 | 0.956026 |
Target: 5'- aCCUGGCCCGccGCGucgugcugggcgacgGGACGGAgguCAGUcccUGCg -3' miRNA: 3'- -GGACUGGGC--UGU---------------UCUGUCU---GUCG---ACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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