Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 9385 | 3' | -53.2 | NC_002512.2 | + | 222723 | 0.66 | 0.990567 |
|
Target: 5'- aCCUG-CCUG-CuGGACGGcaacggcCAGCUGCu -3' miRNA: 3'- -GGACuGGGCuGuUCUGUCu------GUCGACG- -5' |
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| 9385 | 3' | -53.2 | NC_002512.2 | + | 223393 | 0.66 | 0.991605 |
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Target: 5'- uCCUGAgCCUGGacgucguCAAGAaguuCAGCUGCg -3' miRNA: 3'- -GGACU-GGGCU-------GUUCUgucuGUCGACG- -5' |
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| 9385 | 3' | -53.2 | NC_002512.2 | + | 223449 | 0.67 | 0.97869 |
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Target: 5'- cCCUGuCUCGGCGcccGcCAGACGGCcGCc -3' miRNA: 3'- -GGACuGGGCUGUu--CuGUCUGUCGaCG- -5' |
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| 9385 | 3' | -53.2 | NC_002512.2 | + | 224132 | 0.67 | 0.980853 |
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Target: 5'- gCCgugGACCCGcGCcggGAGGCGGACGcGUgagGCg -3' miRNA: 3'- -GGa--CUGGGC-UG---UUCUGUCUGU-CGa--CG- -5' |
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| 9385 | 3' | -53.2 | NC_002512.2 | + | 227612 | 0.68 | 0.973828 |
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Target: 5'- --cGGCCgGA--GGGCGGGCGGCgGCg -3' miRNA: 3'- ggaCUGGgCUguUCUGUCUGUCGaCG- -5' |
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| 9385 | 3' | -53.2 | NC_002512.2 | + | 228037 | 0.76 | 0.673581 |
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Target: 5'- aCCgGACggCGGCGAGACgcccgcGGACGGCUGCg -3' miRNA: 3'- -GGaCUGg-GCUGUUCUG------UCUGUCGACG- -5' |
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| 9385 | 3' | -53.2 | NC_002512.2 | + | 228303 | 0.67 | 0.984683 |
|
Target: 5'- --gGACCCGGgGcGGGgGGACgAGCUGUa -3' miRNA: 3'- ggaCUGGGCUgU-UCUgUCUG-UCGACG- -5' |
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| 9385 | 3' | -53.2 | NC_002512.2 | + | 228536 | 0.66 | 0.990567 |
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Target: 5'- --cGACgagaCGACAcgggAGGCGGACGGCaGCc -3' miRNA: 3'- ggaCUGg---GCUGU----UCUGUCUGUCGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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