miRNA display CGI


Results 41 - 60 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9385 3' -53.2 NC_002512.2 + 171819 0.71 0.898224
Target:  5'- uCCUGcuGCCCGGCAuccgguaccgcgGGACGGucCGGCcGCg -3'
miRNA:   3'- -GGAC--UGGGCUGU------------UCUGUCu-GUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 170085 0.66 0.992749
Target:  5'- gCCUGGCCUG-CuucuuGGGCAGcuuguacuGCAGCcGCc -3'
miRNA:   3'- -GGACUGGGCuGu----UCUGUC--------UGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 161823 0.7 0.916343
Target:  5'- aCCUGGCCCucugcuccGACGAGGCuuccGGACAcgGCgucgGCg -3'
miRNA:   3'- -GGACUGGG--------CUGUUCUG----UCUGU--CGa---CG- -5'
9385 3' -53.2 NC_002512.2 + 160819 0.72 0.856028
Target:  5'- gCCgc-CCCGGCAccagcAGGCGGGCGGCcgGCg -3'
miRNA:   3'- -GGacuGGGCUGU-----UCUGUCUGUCGa-CG- -5'
9385 3' -53.2 NC_002512.2 + 158984 0.7 0.916343
Target:  5'- --cGGCCaCGGCGGGGCggAGGCGGCgGCc -3'
miRNA:   3'- ggaCUGG-GCUGUUCUG--UCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 158687 0.66 0.987899
Target:  5'- -aUGGCCgGcCGGGACGGGgAGgUGCc -3'
miRNA:   3'- ggACUGGgCuGUUCUGUCUgUCgACG- -5'
9385 3' -53.2 NC_002512.2 + 157387 0.74 0.770775
Target:  5'- --gGACCgGACGAGAUcGcCGGCUGCa -3'
miRNA:   3'- ggaCUGGgCUGUUCUGuCuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 157147 0.67 0.984683
Target:  5'- --gGGCCCG---GGGCGGGCGGCggGCc -3'
miRNA:   3'- ggaCUGGGCuguUCUGUCUGUCGa-CG- -5'
9385 3' -53.2 NC_002512.2 + 149236 0.66 0.991715
Target:  5'- aCCgacgGACCCGGCGccgccgccGCGGACGGCcGg -3'
miRNA:   3'- -GGa---CUGGGCUGUuc------UGUCUGUCGaCg -5'
9385 3' -53.2 NC_002512.2 + 147609 0.71 0.891731
Target:  5'- gCCUcGACCCGACccucgacgGGGGCGacgacGACGGCgGCg -3'
miRNA:   3'- -GGA-CUGGGCUG--------UUCUGU-----CUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 144028 0.73 0.79799
Target:  5'- aCUGGCUCGACAgaAGGCggucuAGGCGGgaGCg -3'
miRNA:   3'- gGACUGGGCUGU--UCUG-----UCUGUCgaCG- -5'
9385 3' -53.2 NC_002512.2 + 137235 0.7 0.932384
Target:  5'- cCCgGuCCCGACgAGGACAccGGCGGCgaGCg -3'
miRNA:   3'- -GGaCuGGGCUG-UUCUGU--CUGUCGa-CG- -5'
9385 3' -53.2 NC_002512.2 + 137058 0.68 0.973828
Target:  5'- --gGGCgUGAUgacgGAGGCGGGCAuGCUGCa -3'
miRNA:   3'- ggaCUGgGCUG----UUCUGUCUGU-CGACG- -5'
9385 3' -53.2 NC_002512.2 + 135464 0.67 0.980853
Target:  5'- uCCUGAUggaauaCGACGAGGUAGGCGGCa-- -3'
miRNA:   3'- -GGACUGg-----GCUGUUCUGUCUGUCGacg -5'
9385 3' -53.2 NC_002512.2 + 135176 0.66 0.992551
Target:  5'- gCCUGcgcCCCGcgcaccGCGAGcugucgcacgaGGGCAGCUGCg -3'
miRNA:   3'- -GGACu--GGGC------UGUUCug---------UCUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 132166 0.66 0.989164
Target:  5'- -gUGAgCgCGGCGucgugagcgggauAGACGGuCAGCUGCu -3'
miRNA:   3'- ggACUgG-GCUGU-------------UCUGUCuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 131132 0.67 0.982848
Target:  5'- gCCagGACCCGaugGCGGGGCAGgGCGGCc-- -3'
miRNA:   3'- -GGa-CUGGGC---UGUUCUGUC-UGUCGacg -5'
9385 3' -53.2 NC_002512.2 + 130505 0.66 0.990567
Target:  5'- uCCgGAcCCCGACGcuGGCGGAgAGCUcgggucGCg -3'
miRNA:   3'- -GGaCU-GGGCUGUu-CUGUCUgUCGA------CG- -5'
9385 3' -53.2 NC_002512.2 + 128449 0.68 0.968207
Target:  5'- gCCaUGGCCCaGCAGGAaCAgcGACAGCgacaGCg -3'
miRNA:   3'- -GG-ACUGGGcUGUUCU-GU--CUGUCGa---CG- -5'
9385 3' -53.2 NC_002512.2 + 126750 0.74 0.779064
Target:  5'- uCUUGGCCCGAgacgccuCGGGGCGcGGCGGCgGCg -3'
miRNA:   3'- -GGACUGGGCU-------GUUCUGU-CUGUCGaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.