miRNA display CGI


Results 61 - 80 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9385 3' -53.2 NC_002512.2 + 126648 0.67 0.980853
Target:  5'- cCCUcGCCgCGGCcgucGACGGGCGGCgacGCg -3'
miRNA:   3'- -GGAcUGG-GCUGuu--CUGUCUGUCGa--CG- -5'
9385 3' -53.2 NC_002512.2 + 124866 0.73 0.806782
Target:  5'- --gGACCCgGACGAGAacCGGGCGGCgGCc -3'
miRNA:   3'- ggaCUGGG-CUGUUCU--GUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 124315 0.68 0.97635
Target:  5'- gCUGAUCgGGgcCGcGGCGGACGuGCUGCg -3'
miRNA:   3'- gGACUGGgCU--GUuCUGUCUGU-CGACG- -5'
9385 3' -53.2 NC_002512.2 + 123155 0.78 0.533486
Target:  5'- gCCgGGgCCGAgGAGGCGGACAGgaGCg -3'
miRNA:   3'- -GGaCUgGGCUgUUCUGUCUGUCgaCG- -5'
9385 3' -53.2 NC_002512.2 + 122323 0.69 0.945906
Target:  5'- aCgUGGCCCugaGGCGggGGACGGACaacguccuccagaAGCUGCc -3'
miRNA:   3'- -GgACUGGG---CUGU--UCUGUCUG-------------UCGACG- -5'
9385 3' -53.2 NC_002512.2 + 120933 0.74 0.761452
Target:  5'- cCCgggcGACCCGACGGGcaagggcgGCGGuaacCGGCUGCa -3'
miRNA:   3'- -GGa---CUGGGCUGUUC--------UGUCu---GUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 120758 0.66 0.989298
Target:  5'- aCgUGGCCUGGaaggaGAGGCAGACccucAGCcugGCg -3'
miRNA:   3'- -GgACUGGGCUg----UUCUGUCUG----UCGa--CG- -5'
9385 3' -53.2 NC_002512.2 + 120726 0.67 0.984683
Target:  5'- uCCcGGCCCcgcGCGAGAacGugAGCUGCc -3'
miRNA:   3'- -GGaCUGGGc--UGUUCUguCugUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 119843 0.74 0.770775
Target:  5'- uCCUucGACCCGuACGAGACGa--AGCUGCu -3'
miRNA:   3'- -GGA--CUGGGC-UGUUCUGUcugUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 119448 0.67 0.984149
Target:  5'- -aUGAUCCGGCAGaucucggacaucguGGCGGAgCAGCcGCu -3'
miRNA:   3'- ggACUGGGCUGUU--------------CUGUCU-GUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 119320 0.78 0.533486
Target:  5'- uCCUGACCCGGCAGGACcucccgcGCGGggGCg -3'
miRNA:   3'- -GGACUGGGCUGUUCUGuc-----UGUCgaCG- -5'
9385 3' -53.2 NC_002512.2 + 119273 0.74 0.789053
Target:  5'- gCUGGCCCuGgAGGACAGcaGCAuGCUGCu -3'
miRNA:   3'- gGACUGGGcUgUUCUGUC--UGU-CGACG- -5'
9385 3' -53.2 NC_002512.2 + 118308 0.67 0.982848
Target:  5'- aCCUGcaguacAUCCgggugGACGGGACGGACGcGCUGg -3'
miRNA:   3'- -GGAC------UGGG-----CUGUUCUGUCUGU-CGACg -5'
9385 3' -53.2 NC_002512.2 + 117864 0.73 0.797103
Target:  5'- uCCUGACguucggCCG-CAAGACGGACGccgggggcccgucGCUGCu -3'
miRNA:   3'- -GGACUG------GGCuGUUCUGUCUGU-------------CGACG- -5'
9385 3' -53.2 NC_002512.2 + 117292 0.67 0.986202
Target:  5'- aCCUGAacgacuuCCCG-CAcuaccaccGGACGGACGGCggGUu -3'
miRNA:   3'- -GGACU-------GGGCuGU--------UCUGUCUGUCGa-CG- -5'
9385 3' -53.2 NC_002512.2 + 117103 0.66 0.989164
Target:  5'- cCCUGgACCCGGCAcagcGGcACGGGgccccguCGGCgGCg -3'
miRNA:   3'- -GGAC-UGGGCUGU----UC-UGUCU-------GUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 116735 0.66 0.992749
Target:  5'- aCgUGGCCCGGCugauggcgauGGAcCAGGcCAGCcGCu -3'
miRNA:   3'- -GgACUGGGCUGu---------UCU-GUCU-GUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 116511 0.69 0.945906
Target:  5'- gCUGGCCCuggugcgguacacGGcCAAGACGuGcCAGCUGCu -3'
miRNA:   3'- gGACUGGG-------------CU-GUUCUGU-CuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 115904 0.66 0.989298
Target:  5'- uCCggGACCUGGCGAGgagagaguacgaGCgAGACGGCaugGCc -3'
miRNA:   3'- -GGa-CUGGGCUGUUC------------UG-UCUGUCGa--CG- -5'
9385 3' -53.2 NC_002512.2 + 115525 0.71 0.89107
Target:  5'- gCUGACCUucACGcAGACGGACAuggacguGCUGCg -3'
miRNA:   3'- gGACUGGGc-UGU-UCUGUCUGU-------CGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.