Results 81 - 100 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9385 | 3' | -53.2 | NC_002512.2 | + | 115246 | 0.68 | 0.973828 |
Target: 5'- --cGACCCGACcaccuacacGAUAGGCGGCggggaGCg -3' miRNA: 3'- ggaCUGGGCUGuu-------CUGUCUGUCGa----CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 114882 | 0.71 | 0.878084 |
Target: 5'- gCCUGACCCaccuGAagGAGACguucgaGGACAcGCUGCu -3' miRNA: 3'- -GGACUGGG----CUg-UUCUG------UCUGU-CGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 113271 | 0.66 | 0.992749 |
Target: 5'- --gGGCggCCGGCGGGGCAGccGCGGCggGCc -3' miRNA: 3'- ggaCUG--GGCUGUUCUGUC--UGUCGa-CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 113222 | 0.75 | 0.72313 |
Target: 5'- uCCUcGCCCGGgGAGACGGGCAcgGCaGCa -3' miRNA: 3'- -GGAcUGGGCUgUUCUGUCUGU--CGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 110681 | 0.67 | 0.97869 |
Target: 5'- uCCUGguGCUCGcgcagccgccGCAGGGCcaGGGcCAGCUGCa -3' miRNA: 3'- -GGAC--UGGGC----------UGUUCUG--UCU-GUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 110272 | 0.66 | 0.991715 |
Target: 5'- --cGACCCgGugGAGuACuuccuGGAcCAGCUGCg -3' miRNA: 3'- ggaCUGGG-CugUUC-UG-----UCU-GUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 110069 | 0.67 | 0.980222 |
Target: 5'- gCCUGcaacaucaagcacaACCUGGCGcagAGGcCGGuGCAGCUGCu -3' miRNA: 3'- -GGAC--------------UGGGCUGU---UCU-GUC-UGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 108634 | 0.68 | 0.971115 |
Target: 5'- uCCUGACCUGcaACGGGACccacgGGGCGGUccacaUGUa -3' miRNA: 3'- -GGACUGGGC--UGUUCUG-----UCUGUCG-----ACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 105698 | 0.66 | 0.991715 |
Target: 5'- cUCUGucCCCGGC-GGACGaGCAGCcaggUGCa -3' miRNA: 3'- -GGACu-GGGCUGuUCUGUcUGUCG----ACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 105641 | 0.7 | 0.929343 |
Target: 5'- uCCgaGACCCGGcCGAGguagggcgagccgcaGCAGACGGC-GCg -3' miRNA: 3'- -GGa-CUGGGCU-GUUC---------------UGUCUGUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 105391 | 0.69 | 0.941917 |
Target: 5'- --cGACCCGGCGAcGCucuuGGGCGGCaGCa -3' miRNA: 3'- ggaCUGGGCUGUUcUG----UCUGUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 103326 | 0.69 | 0.958248 |
Target: 5'- gCCgaGGCCCGGgcggcguagccCGGGGCGGACGGCa-- -3' miRNA: 3'- -GGa-CUGGGCU-----------GUUCUGUCUGUCGacg -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 102099 | 0.68 | 0.968207 |
Target: 5'- --aGACUgGACAcgGGAgAGACAGgaGCu -3' miRNA: 3'- ggaCUGGgCUGU--UCUgUCUGUCgaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 101868 | 0.66 | 0.991715 |
Target: 5'- --cGACCCGGCc--GCAG-CAGCcGCg -3' miRNA: 3'- ggaCUGGGCUGuucUGUCuGUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 101765 | 0.76 | 0.683591 |
Target: 5'- gCCUGACCuuCGGCGAGACGGcgccguccucGCGGCggaGCg -3' miRNA: 3'- -GGACUGG--GCUGUUCUGUC----------UGUCGa--CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 100991 | 0.67 | 0.97869 |
Target: 5'- --cGACCaCGuuGugucGCAGACAGCUGCc -3' miRNA: 3'- ggaCUGG-GCugUuc--UGUCUGUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 100913 | 0.67 | 0.980853 |
Target: 5'- --aGGCCCGGCGguaggaAGACAGGCcggagaagucccAGCcGCg -3' miRNA: 3'- ggaCUGGGCUGU------UCUGUCUG------------UCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 100517 | 0.66 | 0.987899 |
Target: 5'- --aGcACCCGcACGAGACAGAaggcgacgacGCUGCc -3' miRNA: 3'- ggaC-UGGGC-UGUUCUGUCUgu--------CGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 94907 | 0.66 | 0.991715 |
Target: 5'- --cGuCCCGGuCGccGGGCAGACAGCUcCg -3' miRNA: 3'- ggaCuGGGCU-GU--UCUGUCUGUCGAcG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 92990 | 0.72 | 0.851399 |
Target: 5'- gCCcGACCUgguggccgucucgguGGC-GGACGGGCAGCUGUg -3' miRNA: 3'- -GGaCUGGG---------------CUGuUCUGUCUGUCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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