Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 9385 | 3' | -53.2 | NC_002512.2 | + | 92606 | 0.7 | 0.932384 |
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Target: 5'- cCCgaGGCCggucgCGACGacGGACGGACGGCgGCc -3' miRNA: 3'- -GGa-CUGG-----GCUGU--UCUGUCUGUCGaCG- -5' |
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| 9385 | 3' | -53.2 | NC_002512.2 | + | 92459 | 0.73 | 0.806782 |
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Target: 5'- aCUGGCCCacgugguguACGAGACgAGcCGGCUGCa -3' miRNA: 3'- gGACUGGGc--------UGUUCUG-UCuGUCGACG- -5' |
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| 9385 | 3' | -53.2 | NC_002512.2 | + | 92065 | 0.74 | 0.770775 |
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Target: 5'- cCCUGGaaCGcuACGAGACGGACGGCcGCc -3' miRNA: 3'- -GGACUggGC--UGUUCUGUCUGUCGaCG- -5' |
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| 9385 | 3' | -53.2 | NC_002512.2 | + | 91910 | 0.68 | 0.973828 |
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Target: 5'- cCCgcucgGGCCCGGCAcgcaGGACAuccGCgAGCUGUu -3' miRNA: 3'- -GGa----CUGGGCUGU----UCUGUc--UG-UCGACG- -5' |
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| 9385 | 3' | -53.2 | NC_002512.2 | + | 89817 | 0.68 | 0.965097 |
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Target: 5'- -aUGACgCCGAgAGGACgucgAGACcgcGCUGCa -3' miRNA: 3'- ggACUG-GGCUgUUCUG----UCUGu--CGACG- -5' |
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| 9385 | 3' | -53.2 | NC_002512.2 | + | 88996 | 0.66 | 0.992749 |
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Target: 5'- --cGACCCGgagcGCGGGGacguCGGGCAGC-GCg -3' miRNA: 3'- ggaCUGGGC----UGUUCU----GUCUGUCGaCG- -5' |
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| 9385 | 3' | -53.2 | NC_002512.2 | + | 82431 | 0.67 | 0.97869 |
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Target: 5'- --aGACCa-GCAGcGACAGACGGCcGCc -3' miRNA: 3'- ggaCUGGgcUGUU-CUGUCUGUCGaCG- -5' |
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| 9385 | 3' | -53.2 | NC_002512.2 | + | 41341 | 0.67 | 0.980853 |
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Target: 5'- aCCgGAUCCGAC-GGACGaagaacgacgucGACAGC-GCg -3' miRNA: 3'- -GGaCUGGGCUGuUCUGU------------CUGUCGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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