Results 61 - 80 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9385 | 3' | -53.2 | NC_002512.2 | + | 192086 | 0.66 | 0.990567 |
Target: 5'- cCCUGACCCagaGCgAGGGCGGcgucauguuccACGGgaGCg -3' miRNA: 3'- -GGACUGGGc--UG-UUCUGUC-----------UGUCgaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 191469 | 0.66 | 0.990567 |
Target: 5'- -gUGGgCCGAguaCGAGGCgccGGACAGCgcgGCg -3' miRNA: 3'- ggACUgGGCU---GUUCUG---UCUGUCGa--CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 100517 | 0.66 | 0.987899 |
Target: 5'- --aGcACCCGcACGAGACAGAaggcgacgacGCUGCc -3' miRNA: 3'- ggaC-UGGGC-UGUUCUGUCUgu--------CGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 117292 | 0.67 | 0.986202 |
Target: 5'- aCCUGAacgacuuCCCG-CAcuaccaccGGACGGACGGCggGUu -3' miRNA: 3'- -GGACU-------GGGCuGU--------UCUGUCUGUCGa-CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 228303 | 0.67 | 0.984683 |
Target: 5'- --gGACCCGGgGcGGGgGGACgAGCUGUa -3' miRNA: 3'- ggaCUGGGCUgU-UCUgUCUG-UCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 157147 | 0.67 | 0.984683 |
Target: 5'- --gGGCCCG---GGGCGGGCGGCggGCc -3' miRNA: 3'- ggaCUGGGCuguUCUGUCUGUCGa-CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 120726 | 0.67 | 0.984683 |
Target: 5'- uCCcGGCCCcgcGCGAGAacGugAGCUGCc -3' miRNA: 3'- -GGaCUGGGc--UGUUCUguCugUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 119448 | 0.67 | 0.984149 |
Target: 5'- -aUGAUCCGGCAGaucucggacaucguGGCGGAgCAGCcGCu -3' miRNA: 3'- ggACUGGGCUGUU--------------CUGUCU-GUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 118308 | 0.67 | 0.982848 |
Target: 5'- aCCUGcaguacAUCCgggugGACGGGACGGACGcGCUGg -3' miRNA: 3'- -GGAC------UGGG-----CUGUUCUGUCUGU-CGACg -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 131132 | 0.67 | 0.982848 |
Target: 5'- gCCagGACCCGaugGCGGGGCAGgGCGGCc-- -3' miRNA: 3'- -GGa-CUGGGC---UGUUCUGUC-UGUCGacg -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 158687 | 0.66 | 0.987899 |
Target: 5'- -aUGGCCgGcCGGGACGGGgAGgUGCc -3' miRNA: 3'- ggACUGGgCuGUUCUGUCUgUCgACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 179303 | 0.66 | 0.987899 |
Target: 5'- uCCaGuCCgcgggCGGCGAGGCGGGCAGaucCUGCa -3' miRNA: 3'- -GGaCuGG-----GCUGUUCUGUCUGUC---GACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 191076 | 0.66 | 0.990567 |
Target: 5'- gCUGGCUgugCGGCAaguggggguGGAUGGugGGUUGCu -3' miRNA: 3'- gGACUGG---GCUGU---------UCUGUCugUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 130505 | 0.66 | 0.990567 |
Target: 5'- uCCgGAcCCCGACGcuGGCGGAgAGCUcgggucGCg -3' miRNA: 3'- -GGaCU-GGGCUGUu-CUGUCUgUCGA------CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 204210 | 0.66 | 0.989298 |
Target: 5'- aCCUGcguUCCGACGAGGC--GCAGCg-- -3' miRNA: 3'- -GGACu--GGGCUGUUCUGucUGUCGacg -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 172576 | 0.66 | 0.989298 |
Target: 5'- uCCUccgcGCCCG-CGAGuACgAGAcCGGCUGCg -3' miRNA: 3'- -GGAc---UGGGCuGUUC-UG-UCU-GUCGACG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 120758 | 0.66 | 0.989298 |
Target: 5'- aCgUGGCCUGGaaggaGAGGCAGACccucAGCcugGCg -3' miRNA: 3'- -GgACUGGGCUg----UUCUGUCUG----UCGa--CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 115904 | 0.66 | 0.989298 |
Target: 5'- uCCggGACCUGGCGAGgagagaguacgaGCgAGACGGCaugGCc -3' miRNA: 3'- -GGa-CUGGGCUGUUC------------UG-UCUGUCGa--CG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 117103 | 0.66 | 0.989164 |
Target: 5'- cCCUGgACCCGGCAcagcGGcACGGGgccccguCGGCgGCg -3' miRNA: 3'- -GGAC-UGGGCUGU----UC-UGUCU-------GUCGaCG- -5' |
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9385 | 3' | -53.2 | NC_002512.2 | + | 132166 | 0.66 | 0.989164 |
Target: 5'- -gUGAgCgCGGCGucgugagcgggauAGACGGuCAGCUGCu -3' miRNA: 3'- ggACUgG-GCUGU-------------UCUGUCuGUCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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