miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9385 3' -53.2 NC_002512.2 + 212143 0.66 0.990567
Target:  5'- aCCUGugCguCGGCGGGcACuggcggcgGGACGGCUGg -3'
miRNA:   3'- -GGACugG--GCUGUUC-UG--------UCUGUCGACg -5'
9385 3' -53.2 NC_002512.2 + 228536 0.66 0.990567
Target:  5'- --cGACgagaCGACAcgggAGGCGGACGGCaGCc -3'
miRNA:   3'- ggaCUGg---GCUGU----UCUGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 222723 0.66 0.990567
Target:  5'- aCCUG-CCUG-CuGGACGGcaacggcCAGCUGCu -3'
miRNA:   3'- -GGACuGGGCuGuUCUGUCu------GUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 115904 0.66 0.989298
Target:  5'- uCCggGACCUGGCGAGgagagaguacgaGCgAGACGGCaugGCc -3'
miRNA:   3'- -GGa-CUGGGCUGUUC------------UG-UCUGUCGa--CG- -5'
9385 3' -53.2 NC_002512.2 + 120758 0.66 0.989298
Target:  5'- aCgUGGCCUGGaaggaGAGGCAGACccucAGCcugGCg -3'
miRNA:   3'- -GgACUGGGCUg----UUCUGUCUG----UCGa--CG- -5'
9385 3' -53.2 NC_002512.2 + 172576 0.66 0.989298
Target:  5'- uCCUccgcGCCCG-CGAGuACgAGAcCGGCUGCg -3'
miRNA:   3'- -GGAc---UGGGCuGUUC-UG-UCU-GUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 204210 0.66 0.989298
Target:  5'- aCCUGcguUCCGACGAGGC--GCAGCg-- -3'
miRNA:   3'- -GGACu--GGGCUGUUCUGucUGUCGacg -5'
9385 3' -53.2 NC_002512.2 + 117103 0.66 0.989164
Target:  5'- cCCUGgACCCGGCAcagcGGcACGGGgccccguCGGCgGCg -3'
miRNA:   3'- -GGAC-UGGGCUGU----UC-UGUCU-------GUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 132166 0.66 0.989164
Target:  5'- -gUGAgCgCGGCGucgugagcgggauAGACGGuCAGCUGCu -3'
miRNA:   3'- ggACUgG-GCUGU-------------UCUGUCuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 100517 0.66 0.987899
Target:  5'- --aGcACCCGcACGAGACAGAaggcgacgacGCUGCc -3'
miRNA:   3'- ggaC-UGGGC-UGUUCUGUCUgu--------CGACG- -5'
9385 3' -53.2 NC_002512.2 + 158687 0.66 0.987899
Target:  5'- -aUGGCCgGcCGGGACGGGgAGgUGCc -3'
miRNA:   3'- ggACUGGgCuGUUCUGUCUgUCgACG- -5'
9385 3' -53.2 NC_002512.2 + 179303 0.66 0.987899
Target:  5'- uCCaGuCCgcgggCGGCGAGGCGGGCAGaucCUGCa -3'
miRNA:   3'- -GGaCuGG-----GCUGUUCUGUCUGUC---GACG- -5'
9385 3' -53.2 NC_002512.2 + 117292 0.67 0.986202
Target:  5'- aCCUGAacgacuuCCCG-CAcuaccaccGGACGGACGGCggGUu -3'
miRNA:   3'- -GGACU-------GGGCuGU--------UCUGUCUGUCGa-CG- -5'
9385 3' -53.2 NC_002512.2 + 228303 0.67 0.984683
Target:  5'- --gGACCCGGgGcGGGgGGACgAGCUGUa -3'
miRNA:   3'- ggaCUGGGCUgU-UCUgUCUG-UCGACG- -5'
9385 3' -53.2 NC_002512.2 + 157147 0.67 0.984683
Target:  5'- --gGGCCCG---GGGCGGGCGGCggGCc -3'
miRNA:   3'- ggaCUGGGCuguUCUGUCUGUCGa-CG- -5'
9385 3' -53.2 NC_002512.2 + 120726 0.67 0.984683
Target:  5'- uCCcGGCCCcgcGCGAGAacGugAGCUGCc -3'
miRNA:   3'- -GGaCUGGGc--UGUUCUguCugUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 119448 0.67 0.984149
Target:  5'- -aUGAUCCGGCAGaucucggacaucguGGCGGAgCAGCcGCu -3'
miRNA:   3'- ggACUGGGCUGUU--------------CUGUCU-GUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 118308 0.67 0.982848
Target:  5'- aCCUGcaguacAUCCgggugGACGGGACGGACGcGCUGg -3'
miRNA:   3'- -GGAC------UGGG-----CUGUUCUGUCUGU-CGACg -5'
9385 3' -53.2 NC_002512.2 + 131132 0.67 0.982848
Target:  5'- gCCagGACCCGaugGCGGGGCAGgGCGGCc-- -3'
miRNA:   3'- -GGa-CUGGGC---UGUUCUGUC-UGUCGacg -5'
9385 3' -53.2 NC_002512.2 + 41341 0.67 0.980853
Target:  5'- aCCgGAUCCGAC-GGACGaagaacgacgucGACAGC-GCg -3'
miRNA:   3'- -GGaCUGGGCUGuUCUGU------------CUGUCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.