miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9385 5' -52.1 NC_002512.2 + 82266 0.68 0.983438
Target:  5'- aGGAUCGCacgccagcgacaGGUCCgcCGUcGUCGAUCUu -3'
miRNA:   3'- -UCUGGUG------------CCAGGauGCAaCAGCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 128306 0.68 0.985221
Target:  5'- cGACCGCGGggacCCUACGc--UCGA-CCu -3'
miRNA:   3'- uCUGGUGCCa---GGAUGCaacAGCUaGG- -5'
9385 5' -52.1 NC_002512.2 + 126980 0.68 0.985221
Target:  5'- gGGuCCGCGGUCCUcucccaGCGcggGUCGuacCCg -3'
miRNA:   3'- -UCuGGUGCCAGGA------UGCaa-CAGCua-GG- -5'
9385 5' -52.1 NC_002512.2 + 151047 0.68 0.986379
Target:  5'- cGGCCcgucacGCGGUCCUcgacggcgggggauGCGgucUCGGUCCg -3'
miRNA:   3'- uCUGG------UGCCAGGA--------------UGCaacAGCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 155680 0.68 0.986854
Target:  5'- gGGACCGCGGcCC-ACGgacGUCGccgCCc -3'
miRNA:   3'- -UCUGGUGCCaGGaUGCaa-CAGCua-GG- -5'
9385 5' -52.1 NC_002512.2 + 184212 0.68 0.988344
Target:  5'- cGGACCGCgGGUUCUcucUGggGUCGA-CCg -3'
miRNA:   3'- -UCUGGUG-CCAGGAu--GCaaCAGCUaGG- -5'
9385 5' -52.1 NC_002512.2 + 193248 0.68 0.988344
Target:  5'- cGACgGCGGUUCUACGccUG-CGcgCCc -3'
miRNA:   3'- uCUGgUGCCAGGAUGCa-ACaGCuaGG- -5'
9385 5' -52.1 NC_002512.2 + 103162 0.68 0.988344
Target:  5'- cGGCguCGGUC--ACGUUGUugUGAUCCa -3'
miRNA:   3'- uCUGguGCCAGgaUGCAACA--GCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 129238 0.67 0.990929
Target:  5'- cGAUCGCGGgacugCUGCGcgGggCGAUCCa -3'
miRNA:   3'- uCUGGUGCCag---GAUGCaaCa-GCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 100070 0.67 0.99304
Target:  5'- gGGGCCGCGGgCCggggACGgaG-CGGUCa -3'
miRNA:   3'- -UCUGGUGCCaGGa---UGCaaCaGCUAGg -5'
9385 5' -52.1 NC_002512.2 + 195049 0.67 0.993937
Target:  5'- -cGCCGCGGcCCgcggGCGggaggGUCG-UCCg -3'
miRNA:   3'- ucUGGUGCCaGGa---UGCaa---CAGCuAGG- -5'
9385 5' -52.1 NC_002512.2 + 51143 0.67 0.994739
Target:  5'- gGGACCACGGUCgcuagggacauCUgugauaaucccACGUaucGUCuGAUCCg -3'
miRNA:   3'- -UCUGGUGCCAG-----------GA-----------UGCAa--CAG-CUAGG- -5'
9385 5' -52.1 NC_002512.2 + 92389 0.67 0.994739
Target:  5'- uGACguCGGUCCUGCaGUucccgcugcUGgaucCGAUCCc -3'
miRNA:   3'- uCUGguGCCAGGAUG-CA---------ACa---GCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 201865 0.67 0.994739
Target:  5'- gGGGCCuGCGGUCCgaggACGgcGgCGGcuucUCCg -3'
miRNA:   3'- -UCUGG-UGCCAGGa---UGCaaCaGCU----AGG- -5'
9385 5' -52.1 NC_002512.2 + 224549 0.67 0.994739
Target:  5'- gGGACCAUGG-CCUuccccaUCGAUCCc -3'
miRNA:   3'- -UCUGGUGCCaGGAugcaacAGCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 218231 0.67 0.994739
Target:  5'- cGGGCCGCGGcgCCgauaUAUGUccggGUCGGcgUCCu -3'
miRNA:   3'- -UCUGGUGCCa-GG----AUGCAa---CAGCU--AGG- -5'
9385 5' -52.1 NC_002512.2 + 221347 0.67 0.994739
Target:  5'- gAGACCGCGG-CCU-CGccgcuccgUGUCGGUg- -3'
miRNA:   3'- -UCUGGUGCCaGGAuGCa-------ACAGCUAgg -5'
9385 5' -52.1 NC_002512.2 + 214952 0.66 0.995453
Target:  5'- uGGCCGCGGaCgcACGggGUCcgGAUCCa -3'
miRNA:   3'- uCUGGUGCCaGgaUGCaaCAG--CUAGG- -5'
9385 5' -52.1 NC_002512.2 + 94405 0.66 0.996644
Target:  5'- aGGACgGCGGUCUUgGCGcuccaGUCGG-CCg -3'
miRNA:   3'- -UCUGgUGCCAGGA-UGCaa---CAGCUaGG- -5'
9385 5' -52.1 NC_002512.2 + 119569 0.66 0.996644
Target:  5'- cGGACCGCGGgagCCcgGCGgguccccUCGcgCCa -3'
miRNA:   3'- -UCUGGUGCCa--GGa-UGCaac----AGCuaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.