Results 41 - 60 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 77086 | 0.67 | 0.980226 |
Target: 5'- cCGCcgUCgccgcgGACCUccgagaCGGAGGCCcggcggucaucgauaGAGACCu -3' miRNA: 3'- -GCGuaAG------CUGGA------GCCUUCGG---------------CUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 211265 | 0.67 | 0.979374 |
Target: 5'- aCGCcauGUUCGACCgcuuuugCGaGugcGCCGAGugCg -3' miRNA: 3'- -GCG---UAAGCUGGa------GC-Cuu-CGGCUCugG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 225973 | 0.67 | 0.979374 |
Target: 5'- aCGacgaCGACCggucUCGGggGCaagGGGACCg -3' miRNA: 3'- -GCguaaGCUGG----AGCCuuCGg--CUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 182431 | 0.67 | 0.979374 |
Target: 5'- uGCGgaacUCGGCCUCGGccuccGCCGugcGGGCg -3' miRNA: 3'- gCGUa---AGCUGGAGCCuu---CGGC---UCUGg -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 156835 | 0.67 | 0.979374 |
Target: 5'- uGCGa--GGCCUgCGGggGCCGcuGCUg -3' miRNA: 3'- gCGUaagCUGGA-GCCuuCGGCucUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 140888 | 0.67 | 0.979374 |
Target: 5'- cCGCAcucuuccgUCGGCCcccCGGccacgAAGCCgGAGACCc -3' miRNA: 3'- -GCGUa-------AGCUGGa--GCC-----UUCGG-CUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 164244 | 0.67 | 0.979374 |
Target: 5'- gGUGUUCGgcGCCguggCGGggGCCGucgggucGAUCg -3' miRNA: 3'- gCGUAAGC--UGGa---GCCuuCGGCu------CUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 147420 | 0.67 | 0.979374 |
Target: 5'- gGCGUcUgGGCCccuuccccgccuUCGGGAGC-GGGACCg -3' miRNA: 3'- gCGUA-AgCUGG------------AGCCUUCGgCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 77348 | 0.67 | 0.974447 |
Target: 5'- --gGUUCG-CCuucgUCGGAAcgccgucGCCGAGACCc -3' miRNA: 3'- gcgUAAGCuGG----AGCCUU-------CGGCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 123125 | 0.67 | 0.974699 |
Target: 5'- cCGCGggcCGagaGCCggacgCGGAGcgccGCCGGGGCCg -3' miRNA: 3'- -GCGUaa-GC---UGGa----GCCUU----CGGCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 113560 | 0.67 | 0.977124 |
Target: 5'- gGCGaagaCGACCUCGaaGAAGUCGcggguGACCg -3' miRNA: 3'- gCGUaa--GCUGGAGC--CUUCGGCu----CUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 146794 | 0.67 | 0.977124 |
Target: 5'- cCGCcg--GACC-CGGAGGaggcCCGGGACCu -3' miRNA: 3'- -GCGuaagCUGGaGCCUUC----GGCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 185743 | 0.67 | 0.977124 |
Target: 5'- uCGUcgUCGACCUCuGGu--CCGucGACCu -3' miRNA: 3'- -GCGuaAGCUGGAG-CCuucGGCu-CUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 193439 | 0.67 | 0.979156 |
Target: 5'- gCGCGaccgCGGCCgccgguggCGGGAGCgggcccuccgggaCGAGGCCc -3' miRNA: 3'- -GCGUaa--GCUGGa-------GCCUUCG-------------GCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 208751 | 0.68 | 0.959377 |
Target: 5'- gGCAgUCGcCCa-GGAAGCCGAagcggaaGGCCa -3' miRNA: 3'- gCGUaAGCuGGagCCUUCGGCU-------CUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 89667 | 0.68 | 0.959728 |
Target: 5'- aCGUAcUCGacguGCCUCGGGgagAGCgGcAGGCCg -3' miRNA: 3'- -GCGUaAGC----UGGAGCCU---UCGgC-UCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 131993 | 0.68 | 0.959728 |
Target: 5'- uCGCGUg-GGCCgcccCGGgcGCCGgggGGACCu -3' miRNA: 3'- -GCGUAagCUGGa---GCCuuCGGC---UCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 157809 | 0.68 | 0.963121 |
Target: 5'- uGCAggUCG-CUgCGGggGCCGGccgcGACCu -3' miRNA: 3'- gCGUa-AGCuGGaGCCuuCGGCU----CUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 216214 | 0.68 | 0.963121 |
Target: 5'- gGCcgUCG-CCUcgucCGGGAGCUGGaGCCg -3' miRNA: 3'- gCGuaAGCuGGA----GCCUUCGGCUcUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 184022 | 0.68 | 0.958669 |
Target: 5'- aGUucuacgUCGACCUCGGuccGCUggucgaguucguguGAGACCg -3' miRNA: 3'- gCGua----AGCUGGAGCCuu-CGG--------------CUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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