Results 61 - 80 of 132 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 226466 | 0.68 | 0.948279 |
Target: 5'- cCGCGa--GGCgggaGGAGGCCGGGGCCc -3' miRNA: 3'- -GCGUaagCUGgag-CCUUCGGCUCUGG- -5' |
|||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 130965 | 0.68 | 0.948279 |
Target: 5'- cCGCcUUauaucgggaGACCUCGGAGGagGAGAUCg -3' miRNA: 3'- -GCGuAAg--------CUGGAGCCUUCggCUCUGG- -5' |
|||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 145778 | 0.68 | 0.956126 |
Target: 5'- aCGCug-UGGCCgcgggaGGAGGUgGAGGCCc -3' miRNA: 3'- -GCGuaaGCUGGag----CCUUCGgCUCUGG- -5' |
|||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 146722 | 0.68 | 0.956126 |
Target: 5'- gGCGgggcggCGGCCgCGGccGCCGGGcCCg -3' miRNA: 3'- gCGUaa----GCUGGaGCCuuCGGCUCuGG- -5' |
|||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 149129 | 0.68 | 0.956126 |
Target: 5'- cCGCGag-GACCccCGGGAcCCGGGACCg -3' miRNA: 3'- -GCGUaagCUGGa-GCCUUcGGCUCUGG- -5' |
|||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 96208 | 0.68 | 0.963121 |
Target: 5'- cCGCGaggUCGGCCaCGGcGGCCGcGGCg -3' miRNA: 3'- -GCGUa--AGCUGGaGCCuUCGGCuCUGg -5' |
|||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 216214 | 0.68 | 0.963121 |
Target: 5'- gGCcgUCG-CCUcgucCGGGAGCUGGaGCCg -3' miRNA: 3'- gCGuaAGCuGGA----GCCUUCGGCUcUGG- -5' |
|||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 157809 | 0.68 | 0.963121 |
Target: 5'- uGCAggUCG-CUgCGGggGCCGGccgcGACCu -3' miRNA: 3'- gCGUa-AGCuGGaGCCuuCGGCU----CUGG- -5' |
|||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 131993 | 0.68 | 0.959728 |
Target: 5'- uCGCGUg-GGCCgcccCGGgcGCCGgggGGACCu -3' miRNA: 3'- -GCGUAagCUGGa---GCCuuCGGC---UCUGG- -5' |
|||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 89667 | 0.68 | 0.959728 |
Target: 5'- aCGUAcUCGacguGCCUCGGGgagAGCgGcAGGCCg -3' miRNA: 3'- -GCGUaAGC----UGGAGCCU---UCGgC-UCUGG- -5' |
|||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 208751 | 0.68 | 0.959377 |
Target: 5'- gGCAgUCGcCCa-GGAAGCCGAagcggaaGGCCa -3' miRNA: 3'- gCGUaAGCuGGagCCUUCGGCU-------CUGG- -5' |
|||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 184022 | 0.68 | 0.958669 |
Target: 5'- aGUucuacgUCGACCUCGGuccGCUggucgaguucguguGAGACCg -3' miRNA: 3'- gCGua----AGCUGGAGCCuu-CGG--------------CUCUGG- -5' |
|||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 212998 | 0.68 | 0.956126 |
Target: 5'- uCGCcg-CGGCCgUCGGGc-CCGGGGCCc -3' miRNA: 3'- -GCGuaaGCUGG-AGCCUucGGCUCUGG- -5' |
|||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 127898 | 0.69 | 0.934858 |
Target: 5'- gGUAcUCGACCgUCGGAucGGCCacGAGcCCg -3' miRNA: 3'- gCGUaAGCUGG-AGCCU--UCGG--CUCuGG- -5' |
|||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 188785 | 0.69 | 0.934858 |
Target: 5'- gGCGgcucCGGCCUCGGcGGCCccGAUCg -3' miRNA: 3'- gCGUaa--GCUGGAGCCuUCGGcuCUGG- -5' |
|||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 158235 | 0.69 | 0.934858 |
Target: 5'- cCGCccaaGUUCGG-CUCGGuGGCCGAGuacACCc -3' miRNA: 3'- -GCG----UAAGCUgGAGCCuUCGGCUC---UGG- -5' |
|||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 126364 | 0.69 | 0.939555 |
Target: 5'- aCGCGUUCacgguccucuGGCCgccCGGGAGagcgcCCGGGGCCc -3' miRNA: 3'- -GCGUAAG----------CUGGa--GCCUUC-----GGCUCUGG- -5' |
|||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 196901 | 0.69 | 0.944028 |
Target: 5'- gGCGUcaUgGccaGCCUCauGGAGGCCGAGAgCa -3' miRNA: 3'- gCGUA--AgC---UGGAG--CCUUCGGCUCUgG- -5' |
|||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 186472 | 0.69 | 0.944028 |
Target: 5'- uGCugcUCGGCCggCGGAucGCCGAGuucguCCa -3' miRNA: 3'- gCGua-AGCUGGa-GCCUu-CGGCUCu----GG- -5' |
|||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 94564 | 0.69 | 0.934858 |
Target: 5'- gCGCGgcugacgcCGACCUCGGGGaccGCCG-GACa -3' miRNA: 3'- -GCGUaa------GCUGGAGCCUU---CGGCuCUGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home