miRNA display CGI


Results 81 - 100 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 3' -54.3 NC_002512.2 + 204853 0.69 0.919416
Target:  5'- gGCggUCGGuCCUCguGGAGGuCCGcGACCg -3'
miRNA:   3'- gCGuaAGCU-GGAG--CCUUC-GGCuCUGG- -5'
9386 3' -54.3 NC_002512.2 + 177102 0.69 0.934858
Target:  5'- uGCGUcuccgCGACCa-GGAGGuCCGGGugCg -3'
miRNA:   3'- gCGUAa----GCUGGagCCUUC-GGCUCugG- -5'
9386 3' -54.3 NC_002512.2 + 37355 0.69 0.934858
Target:  5'- uGUAUUCgGGCUUCGGuuugguucGCCGAGucGCCg -3'
miRNA:   3'- gCGUAAG-CUGGAGCCuu------CGGCUC--UGG- -5'
9386 3' -54.3 NC_002512.2 + 133803 0.69 0.944028
Target:  5'- uCGCGUccgUCGACCUgacCGaGAcGGCCGAGucguACCg -3'
miRNA:   3'- -GCGUA---AGCUGGA---GC-CU-UCGGCUC----UGG- -5'
9386 3' -54.3 NC_002512.2 + 186472 0.69 0.944028
Target:  5'- uGCugcUCGGCCggCGGAucGCCGAGuucguCCa -3'
miRNA:   3'- gCGua-AGCUGGa-GCCUu-CGGCUCu----GG- -5'
9386 3' -54.3 NC_002512.2 + 196901 0.69 0.944028
Target:  5'- gGCGUcaUgGccaGCCUCauGGAGGCCGAGAgCa -3'
miRNA:   3'- gCGUA--AgC---UGGAG--CCUUCGGCUCUgG- -5'
9386 3' -54.3 NC_002512.2 + 126364 0.69 0.939555
Target:  5'- aCGCGUUCacgguccucuGGCCgccCGGGAGagcgcCCGGGGCCc -3'
miRNA:   3'- -GCGUAAG----------CUGGa--GCCUUC-----GGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 158235 0.69 0.934858
Target:  5'- cCGCccaaGUUCGG-CUCGGuGGCCGAGuacACCc -3'
miRNA:   3'- -GCG----UAAGCUgGAGCCuUCGGCUC---UGG- -5'
9386 3' -54.3 NC_002512.2 + 188785 0.69 0.934858
Target:  5'- gGCGgcucCGGCCUCGGcGGCCccGAUCg -3'
miRNA:   3'- gCGUaa--GCUGGAGCCuUCGGcuCUGG- -5'
9386 3' -54.3 NC_002512.2 + 127898 0.69 0.934858
Target:  5'- gGUAcUCGACCgUCGGAucGGCCacGAGcCCg -3'
miRNA:   3'- gCGUaAGCUGG-AGCCU--UCGG--CUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 94564 0.69 0.934858
Target:  5'- gCGCGgcugacgcCGACCUCGGGGaccGCCG-GACa -3'
miRNA:   3'- -GCGUaa------GCUGGAGCCUU---CGGCuCUGg -5'
9386 3' -54.3 NC_002512.2 + 124341 0.7 0.901334
Target:  5'- uGCGgcuguaccugaucUUCGACCccCGGgcGCCGGGGuCCa -3'
miRNA:   3'- gCGU-------------AAGCUGGa-GCCuuCGGCUCU-GG- -5'
9386 3' -54.3 NC_002512.2 + 106644 0.7 0.90195
Target:  5'- gGUcgUCGAgCUCGaaGAAGUCGAGcCCg -3'
miRNA:   3'- gCGuaAGCUgGAGC--CUUCGGCUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 189637 0.7 0.90195
Target:  5'- uCGCggUCGGCUucgUCGGGAcgcGCCGAcACCg -3'
miRNA:   3'- -GCGuaAGCUGG---AGCCUU---CGGCUcUGG- -5'
9386 3' -54.3 NC_002512.2 + 220871 0.7 0.905604
Target:  5'- cCGCGg--GGCCUCGGcgcucuccaucguGGCCGAcGACCu -3'
miRNA:   3'- -GCGUaagCUGGAGCCu------------UCGGCU-CUGG- -5'
9386 3' -54.3 NC_002512.2 + 129497 0.7 0.907995
Target:  5'- aCGCucuccgCGGCCg-GGAAGUCGGGAgCCg -3'
miRNA:   3'- -GCGuaa---GCUGGagCCUUCGGCUCU-GG- -5'
9386 3' -54.3 NC_002512.2 + 220731 0.7 0.907995
Target:  5'- gGC-UUCGACCUCcaccucauGGAGcgcugggccGUCGAGGCCg -3'
miRNA:   3'- gCGuAAGCUGGAG--------CCUU---------CGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 131220 0.7 0.907995
Target:  5'- gGCGcUCGACgucgcggUCGGAGGCCGcgguGGCCu -3'
miRNA:   3'- gCGUaAGCUGg------AGCCUUCGGCu---CUGG- -5'
9386 3' -54.3 NC_002512.2 + 144123 0.7 0.907995
Target:  5'- uCGCGgucuaucUCGGCCaggUCGGccGCgGAGACCc -3'
miRNA:   3'- -GCGUa------AGCUGG---AGCCuuCGgCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 127756 0.7 0.895686
Target:  5'- cCGUAgaCGGCCa-GGGucccccuccgacGGCCGAGGCCg -3'
miRNA:   3'- -GCGUaaGCUGGagCCU------------UCGGCUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.