miRNA display CGI


Results 101 - 120 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 3' -54.3 NC_002512.2 + 131220 0.7 0.907995
Target:  5'- gGCGcUCGACgucgcggUCGGAGGCCGcgguGGCCu -3'
miRNA:   3'- gCGUaAGCUGg------AGCCUUCGGCu---CUGG- -5'
9386 3' -54.3 NC_002512.2 + 220731 0.7 0.907995
Target:  5'- gGC-UUCGACCUCcaccucauGGAGcgcugggccGUCGAGGCCg -3'
miRNA:   3'- gCGuAAGCUGGAG--------CCUU---------CGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 129497 0.7 0.907995
Target:  5'- aCGCucuccgCGGCCg-GGAAGUCGGGAgCCg -3'
miRNA:   3'- -GCGuaa---GCUGGagCCUUCGGCUCU-GG- -5'
9386 3' -54.3 NC_002512.2 + 219216 0.71 0.853677
Target:  5'- uGCcgggcCGGCCUCGGcgAGGUCGGGAUCg -3'
miRNA:   3'- gCGuaa--GCUGGAGCC--UUCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 94645 0.71 0.853677
Target:  5'- gCGCGgacgaCGGCCUCGaGGcGGcCCGGGGCCg -3'
miRNA:   3'- -GCGUaa---GCUGGAGC-CU-UC-GGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 189986 0.71 0.853677
Target:  5'- cCGCGUcuacaggaaggUCGACCUCaaguuGGccgcGGUCGAGGCCg -3'
miRNA:   3'- -GCGUA-----------AGCUGGAG-----CCu---UCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 196416 0.71 0.861183
Target:  5'- aCGCGgggggcggCGGCCgggUCGGGagaGGUCGGGGCCa -3'
miRNA:   3'- -GCGUaa------GCUGG---AGCCU---UCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 225805 0.71 0.861183
Target:  5'- cCGCGggCGGCCg-GGuGGCCuGGGACCu -3'
miRNA:   3'- -GCGUaaGCUGGagCCuUCGG-CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 92554 0.71 0.861183
Target:  5'- cCGCGgcgaCGACgUCGGAGgcGCCGAcGCCg -3'
miRNA:   3'- -GCGUaa--GCUGgAGCCUU--CGGCUcUGG- -5'
9386 3' -54.3 NC_002512.2 + 99626 0.71 0.868494
Target:  5'- uCGCGgucgUCGcCCUCGGAGGgcccggcgcCCGAG-CCg -3'
miRNA:   3'- -GCGUa---AGCuGGAGCCUUC---------GGCUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 119104 0.71 0.875604
Target:  5'- uGCGggCGGCCUCGGcgcAGCUGcGGACg -3'
miRNA:   3'- gCGUaaGCUGGAGCCu--UCGGC-UCUGg -5'
9386 3' -54.3 NC_002512.2 + 46167 0.72 0.813433
Target:  5'- aCGCuggUgGAUa-CGGGAGCCGAGAUCg -3'
miRNA:   3'- -GCGua-AgCUGgaGCCUUCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 211985 0.72 0.821821
Target:  5'- gGCcgUCGuCCUCGG-GGCCGccGCCg -3'
miRNA:   3'- gCGuaAGCuGGAGCCuUCGGCucUGG- -5'
9386 3' -54.3 NC_002512.2 + 143726 0.72 0.830047
Target:  5'- cCGCAgcagGGCCUCGGAggcGGCCGcGGCg -3'
miRNA:   3'- -GCGUaag-CUGGAGCCU---UCGGCuCUGg -5'
9386 3' -54.3 NC_002512.2 + 195283 0.72 0.830047
Target:  5'- uCGCGUUCc-CCgCGGggGCCGGcGCCg -3'
miRNA:   3'- -GCGUAAGcuGGaGCCuuCGGCUcUGG- -5'
9386 3' -54.3 NC_002512.2 + 186525 0.72 0.838102
Target:  5'- aGCG-UCGACCUCugcgugcacGggGCCGAGcCCu -3'
miRNA:   3'- gCGUaAGCUGGAGc--------CuuCGGCUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 131150 0.72 0.845981
Target:  5'- gGCAgggCGGCCgagaGGAagcGGCCGAGcCCg -3'
miRNA:   3'- gCGUaa-GCUGGag--CCU---UCGGCUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 88989 0.73 0.778404
Target:  5'- cCGUcgUCGACC-CGGAGcGCgGGGACg -3'
miRNA:   3'- -GCGuaAGCUGGaGCCUU-CGgCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 119952 0.73 0.778404
Target:  5'- aCGCggUgGACUUCGuGgcGCUGGGGCCg -3'
miRNA:   3'- -GCGuaAgCUGGAGC-CuuCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 74566 0.73 0.766568
Target:  5'- cCGCcg-CGACCUgGGcgcucuggugcucgAGGCCGGGGCCc -3'
miRNA:   3'- -GCGuaaGCUGGAgCC--------------UUCGGCUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.