Results 41 - 60 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 127756 | 0.7 | 0.895686 |
Target: 5'- cCGUAgaCGGCCa-GGGucccccuccgacGGCCGAGGCCg -3' miRNA: 3'- -GCGUaaGCUGGagCCU------------UCGGCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 204853 | 0.69 | 0.919416 |
Target: 5'- gGCggUCGGuCCUCguGGAGGuCCGcGACCg -3' miRNA: 3'- gCGuaAGCU-GGAG--CCUUC-GGCuCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 37355 | 0.69 | 0.934858 |
Target: 5'- uGUAUUCgGGCUUCGGuuugguucGCCGAGucGCCg -3' miRNA: 3'- gCGUAAG-CUGGAGCCuu------CGGCUC--UGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 127898 | 0.69 | 0.934858 |
Target: 5'- gGUAcUCGACCgUCGGAucGGCCacGAGcCCg -3' miRNA: 3'- gCGUaAGCUGG-AGCCU--UCGG--CUCuGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 188785 | 0.69 | 0.934858 |
Target: 5'- gGCGgcucCGGCCUCGGcGGCCccGAUCg -3' miRNA: 3'- gCGUaa--GCUGGAGCCuUCGGcuCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 186472 | 0.69 | 0.944028 |
Target: 5'- uGCugcUCGGCCggCGGAucGCCGAGuucguCCa -3' miRNA: 3'- gCGua-AGCUGGa-GCCUu-CGGCUCu----GG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 94564 | 0.69 | 0.934858 |
Target: 5'- gCGCGgcugacgcCGACCUCGGGGaccGCCG-GACa -3' miRNA: 3'- -GCGUaa------GCUGGAGCCUU---CGGCuCUGg -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 158235 | 0.69 | 0.934858 |
Target: 5'- cCGCccaaGUUCGG-CUCGGuGGCCGAGuacACCc -3' miRNA: 3'- -GCG----UAAGCUgGAGCCuUCGGCUC---UGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 126364 | 0.69 | 0.939555 |
Target: 5'- aCGCGUUCacgguccucuGGCCgccCGGGAGagcgcCCGGGGCCc -3' miRNA: 3'- -GCGUAAG----------CUGGa--GCCUUC-----GGCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 177102 | 0.69 | 0.934858 |
Target: 5'- uGCGUcuccgCGACCa-GGAGGuCCGGGugCg -3' miRNA: 3'- gCGUAa----GCUGGagCCUUC-GGCUCugG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 133803 | 0.69 | 0.944028 |
Target: 5'- uCGCGUccgUCGACCUgacCGaGAcGGCCGAGucguACCg -3' miRNA: 3'- -GCGUA---AGCUGGA---GC-CU-UCGGCUC----UGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 196901 | 0.69 | 0.944028 |
Target: 5'- gGCGUcaUgGccaGCCUCauGGAGGCCGAGAgCa -3' miRNA: 3'- gCGUA--AgC---UGGAG--CCUUCGGCUCUgG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 52021 | 0.69 | 0.924789 |
Target: 5'- ----cUCGACCgCGGucuauGGGCCGAGACUu -3' miRNA: 3'- gcguaAGCUGGaGCC-----UUCGGCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 212425 | 0.69 | 0.924789 |
Target: 5'- gGCGggaggUCGAgUUCGGGccggccGGCCGcGACCg -3' miRNA: 3'- gCGUa----AGCUgGAGCCU------UCGGCuCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 185363 | 0.69 | 0.924789 |
Target: 5'- uCGCcgUCGACUgcgacaccuUCGGcGGCggcugCGAGGCCg -3' miRNA: 3'- -GCGuaAGCUGG---------AGCCuUCG-----GCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 75338 | 0.69 | 0.929936 |
Target: 5'- -cCAUggCGACCgaggCGGAGGCgGcGGACCg -3' miRNA: 3'- gcGUAa-GCUGGa---GCCUUCGgC-UCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 82356 | 0.69 | 0.929936 |
Target: 5'- aGCGuUUCGcGCCUCGc--GCCGGGAUCg -3' miRNA: 3'- gCGU-AAGC-UGGAGCcuuCGGCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 124292 | 0.69 | 0.929936 |
Target: 5'- gGCGUgcggcUCGACCgCGcGGAGCugauCGGGGCCg -3' miRNA: 3'- gCGUA-----AGCUGGaGC-CUUCG----GCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 113192 | 0.69 | 0.934858 |
Target: 5'- uCGCcgUCcgcuCCgcgagCGGGAGCCGGGuCCu -3' miRNA: 3'- -GCGuaAGcu--GGa----GCCUUCGGCUCuGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 208751 | 0.68 | 0.959377 |
Target: 5'- gGCAgUCGcCCa-GGAAGCCGAagcggaaGGCCa -3' miRNA: 3'- gCGUaAGCuGGagCCUUCGGCU-------CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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