Results 81 - 100 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 184773 | 0.67 | 0.972093 |
Target: 5'- gGUcgUCGACCccgaGGAcguGGCCcGGGCCu -3' miRNA: 3'- gCGuaAGCUGGag--CCU---UCGGcUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 147420 | 0.67 | 0.979374 |
Target: 5'- gGCGUcUgGGCCccuuccccgccuUCGGGAGC-GGGACCg -3' miRNA: 3'- gCGUA-AgCUGG------------AGCCUUCGgCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 164244 | 0.67 | 0.979374 |
Target: 5'- gGUGUUCGgcGCCguggCGGggGCCGucgggucGAUCg -3' miRNA: 3'- gCGUAAGC--UGGa---GCCuuCGGCu------CUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 140888 | 0.67 | 0.979374 |
Target: 5'- cCGCAcucuuccgUCGGCCcccCGGccacgAAGCCgGAGACCc -3' miRNA: 3'- -GCGUa-------AGCUGGa--GCC-----UUCGG-CUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 156835 | 0.67 | 0.979374 |
Target: 5'- uGCGa--GGCCUgCGGggGCCGcuGCUg -3' miRNA: 3'- gCGUaagCUGGA-GCCuuCGGCucUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 182431 | 0.67 | 0.979374 |
Target: 5'- uGCGgaacUCGGCCUCGGccuccGCCGugcGGGCg -3' miRNA: 3'- gCGUa---AGCUGGAGCCuu---CGGC---UCUGg -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 211265 | 0.67 | 0.979374 |
Target: 5'- aCGCcauGUUCGACCgcuuuugCGaGugcGCCGAGugCg -3' miRNA: 3'- -GCG---UAAGCUGGa------GC-Cuu-CGGCUCugG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 77086 | 0.67 | 0.980226 |
Target: 5'- cCGCcgUCgccgcgGACCUccgagaCGGAGGCCcggcggucaucgauaGAGACCu -3' miRNA: 3'- -GCGuaAG------CUGGA------GCCUUCGG---------------CUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 225973 | 0.67 | 0.979374 |
Target: 5'- aCGacgaCGACCggucUCGGggGCaagGGGACCg -3' miRNA: 3'- -GCguaaGCUGG----AGCCuuCGg--CUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 33273 | 0.67 | 0.972093 |
Target: 5'- -----aCGACCUCGGAAcgaucGCUGAagaaGACCg -3' miRNA: 3'- gcguaaGCUGGAGCCUU-----CGGCU----CUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 225732 | 0.67 | 0.971822 |
Target: 5'- cCGCgg-CGACUcgcucagUCGGGgcgcGGCCGGGACa -3' miRNA: 3'- -GCGuaaGCUGG-------AGCCU----UCGGCUCUGg -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 7623 | 0.67 | 0.966309 |
Target: 5'- gCGCGUUUGgucACCgUGGAGGCCaauggGAGACg -3' miRNA: 3'- -GCGUAAGC---UGGaGCCUUCGG-----CUCUGg -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 174405 | 0.67 | 0.966309 |
Target: 5'- gCGCGUUC--CCgCGGc-GCCGGGGCCu -3' miRNA: 3'- -GCGUAAGcuGGaGCCuuCGGCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 208864 | 0.67 | 0.966309 |
Target: 5'- uCGCuuaaUCGGCaCUCGGGgggacgggaggGGCCGGGAauccCCg -3' miRNA: 3'- -GCGua--AGCUG-GAGCCU-----------UCGGCUCU----GG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 90634 | 0.67 | 0.966309 |
Target: 5'- gGCGgcgCGACC-CGGc-GCCGcGGCCg -3' miRNA: 3'- gCGUaa-GCUGGaGCCuuCGGCuCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 96526 | 0.67 | 0.969298 |
Target: 5'- aGCcg-CG-CCggCGGuguGAGCCGGGGCCg -3' miRNA: 3'- gCGuaaGCuGGa-GCC---UUCGGCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 95834 | 0.67 | 0.969298 |
Target: 5'- gGCGa-CGGCCcgcaGGAGGCCGGGGgCg -3' miRNA: 3'- gCGUaaGCUGGag--CCUUCGGCUCUgG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 76093 | 0.67 | 0.969298 |
Target: 5'- -----cCGGCgaUCGGAAGCUGAGGCg -3' miRNA: 3'- gcguaaGCUGg-AGCCUUCGGCUCUGg -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 130203 | 0.67 | 0.969298 |
Target: 5'- uCGCAUgaUCGGCCagugguccUCGGcGGCgGGGAaCCu -3' miRNA: 3'- -GCGUA--AGCUGG--------AGCCuUCGgCUCU-GG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 157346 | 0.67 | 0.969298 |
Target: 5'- cCGUGUUCcGCCU-GGccGCCGAGGuCCg -3' miRNA: 3'- -GCGUAAGcUGGAgCCuuCGGCUCU-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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