miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 3' -54.3 NC_002512.2 + 226466 0.68 0.948279
Target:  5'- cCGCGa--GGCgggaGGAGGCCGGGGCCc -3'
miRNA:   3'- -GCGUaagCUGgag-CCUUCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 200865 0.68 0.949918
Target:  5'- cCGCAUggcgUCGACCacgccgcccaccacgUCGuucagcguGAAcGCCGAGGCCg -3'
miRNA:   3'- -GCGUA----AGCUGG---------------AGC--------CUU-CGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 132370 0.68 0.952311
Target:  5'- aGCGUgucgaCGACCUccccgCGGAAGUCGuGGACg -3'
miRNA:   3'- gCGUAa----GCUGGA-----GCCUUCGGC-UCUGg -5'
9386 3' -54.3 NC_002512.2 + 170839 0.68 0.952311
Target:  5'- aGCGgcggCGACC-CGGAcGUCGAGugUc -3'
miRNA:   3'- gCGUaa--GCUGGaGCCUuCGGCUCugG- -5'
9386 3' -54.3 NC_002512.2 + 224069 0.68 0.952311
Target:  5'- gGCGUcugCGACCUcuccaCGGAGGaCCucaggGGGACCg -3'
miRNA:   3'- gCGUAa--GCUGGA-----GCCUUC-GG-----CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 195073 0.68 0.952311
Target:  5'- uCGUccggUCGGggaCUCGaGggGUCGAGGCCg -3'
miRNA:   3'- -GCGua--AGCUg--GAGC-CuuCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 213713 0.68 0.955754
Target:  5'- gGCuucUUCGACgUCGGA-GCUGAcgacguuGACCg -3'
miRNA:   3'- gCGu--AAGCUGgAGCCUuCGGCU-------CUGG- -5'
9386 3' -54.3 NC_002512.2 + 145778 0.68 0.956126
Target:  5'- aCGCug-UGGCCgcgggaGGAGGUgGAGGCCc -3'
miRNA:   3'- -GCGuaaGCUGGag----CCUUCGgCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 146722 0.68 0.956126
Target:  5'- gGCGgggcggCGGCCgCGGccGCCGGGcCCg -3'
miRNA:   3'- gCGUaa----GCUGGaGCCuuCGGCUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 149129 0.68 0.956126
Target:  5'- cCGCGag-GACCccCGGGAcCCGGGACCg -3'
miRNA:   3'- -GCGUaagCUGGa-GCCUUcGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 212998 0.68 0.956126
Target:  5'- uCGCcg-CGGCCgUCGGGc-CCGGGGCCc -3'
miRNA:   3'- -GCGuaaGCUGG-AGCCUucGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 184022 0.68 0.958669
Target:  5'- aGUucuacgUCGACCUCGGuccGCUggucgaguucguguGAGACCg -3'
miRNA:   3'- gCGua----AGCUGGAGCCuu-CGG--------------CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 208751 0.68 0.959377
Target:  5'- gGCAgUCGcCCa-GGAAGCCGAagcggaaGGCCa -3'
miRNA:   3'- gCGUaAGCuGGagCCUUCGGCU-------CUGG- -5'
9386 3' -54.3 NC_002512.2 + 89667 0.68 0.959728
Target:  5'- aCGUAcUCGacguGCCUCGGGgagAGCgGcAGGCCg -3'
miRNA:   3'- -GCGUaAGC----UGGAGCCU---UCGgC-UCUGG- -5'
9386 3' -54.3 NC_002512.2 + 131993 0.68 0.959728
Target:  5'- uCGCGUg-GGCCgcccCGGgcGCCGgggGGACCu -3'
miRNA:   3'- -GCGUAagCUGGa---GCCuuCGGC---UCUGG- -5'
9386 3' -54.3 NC_002512.2 + 216214 0.68 0.963121
Target:  5'- gGCcgUCG-CCUcgucCGGGAGCUGGaGCCg -3'
miRNA:   3'- gCGuaAGCuGGA----GCCUUCGGCUcUGG- -5'
9386 3' -54.3 NC_002512.2 + 96208 0.68 0.963121
Target:  5'- cCGCGaggUCGGCCaCGGcGGCCGcGGCg -3'
miRNA:   3'- -GCGUa--AGCUGGaGCCuUCGGCuCUGg -5'
9386 3' -54.3 NC_002512.2 + 157809 0.68 0.963121
Target:  5'- uGCAggUCG-CUgCGGggGCCGGccgcGACCu -3'
miRNA:   3'- gCGUa-AGCuGGaGCCuuCGGCU----CUGG- -5'
9386 3' -54.3 NC_002512.2 + 7623 0.67 0.966309
Target:  5'- gCGCGUUUGgucACCgUGGAGGCCaauggGAGACg -3'
miRNA:   3'- -GCGUAAGC---UGGaGCCUUCGG-----CUCUGg -5'
9386 3' -54.3 NC_002512.2 + 174405 0.67 0.966309
Target:  5'- gCGCGUUC--CCgCGGc-GCCGGGGCCu -3'
miRNA:   3'- -GCGUAAGcuGGaGCCuuCGGCUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.