miRNA display CGI


Results 61 - 80 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 3' -54.3 NC_002512.2 + 184022 0.68 0.958669
Target:  5'- aGUucuacgUCGACCUCGGuccGCUggucgaguucguguGAGACCg -3'
miRNA:   3'- gCGua----AGCUGGAGCCuu-CGG--------------CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 212998 0.68 0.956126
Target:  5'- uCGCcg-CGGCCgUCGGGc-CCGGGGCCc -3'
miRNA:   3'- -GCGuaaGCUGG-AGCCUucGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 149129 0.68 0.956126
Target:  5'- cCGCGag-GACCccCGGGAcCCGGGACCg -3'
miRNA:   3'- -GCGUaagCUGGa-GCCUUcGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 146722 0.68 0.956126
Target:  5'- gGCGgggcggCGGCCgCGGccGCCGGGcCCg -3'
miRNA:   3'- gCGUaa----GCUGGaGCCuuCGGCUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 145778 0.68 0.956126
Target:  5'- aCGCug-UGGCCgcgggaGGAGGUgGAGGCCc -3'
miRNA:   3'- -GCGuaaGCUGGag----CCUUCGgCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 213713 0.68 0.955754
Target:  5'- gGCuucUUCGACgUCGGA-GCUGAcgacguuGACCg -3'
miRNA:   3'- gCGu--AAGCUGgAGCCUuCGGCU-------CUGG- -5'
9386 3' -54.3 NC_002512.2 + 132370 0.68 0.952311
Target:  5'- aGCGUgucgaCGACCUccccgCGGAAGUCGuGGACg -3'
miRNA:   3'- gCGUAa----GCUGGA-----GCCUUCGGC-UCUGg -5'
9386 3' -54.3 NC_002512.2 + 170839 0.68 0.952311
Target:  5'- aGCGgcggCGACC-CGGAcGUCGAGugUc -3'
miRNA:   3'- gCGUaa--GCUGGaGCCUuCGGCUCugG- -5'
9386 3' -54.3 NC_002512.2 + 224069 0.68 0.952311
Target:  5'- gGCGUcugCGACCUcuccaCGGAGGaCCucaggGGGACCg -3'
miRNA:   3'- gCGUAa--GCUGGA-----GCCUUC-GG-----CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 195073 0.68 0.952311
Target:  5'- uCGUccggUCGGggaCUCGaGggGUCGAGGCCg -3'
miRNA:   3'- -GCGua--AGCUg--GAGC-CuuCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 200865 0.68 0.949918
Target:  5'- cCGCAUggcgUCGACCacgccgcccaccacgUCGuucagcguGAAcGCCGAGGCCg -3'
miRNA:   3'- -GCGUA----AGCUGG---------------AGC--------CUU-CGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 130965 0.68 0.948279
Target:  5'- cCGCcUUauaucgggaGACCUCGGAGGagGAGAUCg -3'
miRNA:   3'- -GCGuAAg--------CUGGAGCCUUCggCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 226466 0.68 0.948279
Target:  5'- cCGCGa--GGCgggaGGAGGCCGGGGCCc -3'
miRNA:   3'- -GCGUaagCUGgag-CCUUCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 133803 0.69 0.944028
Target:  5'- uCGCGUccgUCGACCUgacCGaGAcGGCCGAGucguACCg -3'
miRNA:   3'- -GCGUA---AGCUGGA---GC-CU-UCGGCUC----UGG- -5'
9386 3' -54.3 NC_002512.2 + 186472 0.69 0.944028
Target:  5'- uGCugcUCGGCCggCGGAucGCCGAGuucguCCa -3'
miRNA:   3'- gCGua-AGCUGGa-GCCUu-CGGCUCu----GG- -5'
9386 3' -54.3 NC_002512.2 + 196901 0.69 0.944028
Target:  5'- gGCGUcaUgGccaGCCUCauGGAGGCCGAGAgCa -3'
miRNA:   3'- gCGUA--AgC---UGGAG--CCUUCGGCUCUgG- -5'
9386 3' -54.3 NC_002512.2 + 126364 0.69 0.939555
Target:  5'- aCGCGUUCacgguccucuGGCCgccCGGGAGagcgcCCGGGGCCc -3'
miRNA:   3'- -GCGUAAG----------CUGGa--GCCUUC-----GGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 188785 0.69 0.934858
Target:  5'- gGCGgcucCGGCCUCGGcGGCCccGAUCg -3'
miRNA:   3'- gCGUaa--GCUGGAGCCuUCGGcuCUGG- -5'
9386 3' -54.3 NC_002512.2 + 127898 0.69 0.934858
Target:  5'- gGUAcUCGACCgUCGGAucGGCCacGAGcCCg -3'
miRNA:   3'- gCGUaAGCUGG-AGCCU--UCGG--CUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 94564 0.69 0.934858
Target:  5'- gCGCGgcugacgcCGACCUCGGGGaccGCCG-GACa -3'
miRNA:   3'- -GCGUaa------GCUGGAGCCUU---CGGCuCUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.