miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 3' -54.3 NC_002512.2 + 146722 0.68 0.956126
Target:  5'- gGCGgggcggCGGCCgCGGccGCCGGGcCCg -3'
miRNA:   3'- gCGUaa----GCUGGaGCCuuCGGCUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 146794 0.67 0.977124
Target:  5'- cCGCcg--GACC-CGGAGGaggcCCGGGACCu -3'
miRNA:   3'- -GCGuaagCUGGaGCCUUC----GGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 146957 0.66 0.983374
Target:  5'- aGCg--CGACgaCGGcGGCCGcGGCCg -3'
miRNA:   3'- gCGuaaGCUGgaGCCuUCGGCuCUGG- -5'
9386 3' -54.3 NC_002512.2 + 147420 0.67 0.979374
Target:  5'- gGCGUcUgGGCCccuuccccgccuUCGGGAGC-GGGACCg -3'
miRNA:   3'- gCGUA-AgCUGG------------AGCCUUCGgCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 149129 0.68 0.956126
Target:  5'- cCGCGag-GACCccCGGGAcCCGGGACCg -3'
miRNA:   3'- -GCGUaagCUGGa-GCCUUcGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 150555 0.66 0.984098
Target:  5'- cCGCcg-CGACCUgGGAggggaggaggagcggGGCgCGGGACg -3'
miRNA:   3'- -GCGuaaGCUGGAgCCU---------------UCG-GCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 152610 0.67 0.972093
Target:  5'- gGguUUCGAgCUCcGggGCCGGGGa- -3'
miRNA:   3'- gCguAAGCUgGAGcCuuCGGCUCUgg -5'
9386 3' -54.3 NC_002512.2 + 156835 0.67 0.979374
Target:  5'- uGCGa--GGCCUgCGGggGCCGcuGCUg -3'
miRNA:   3'- gCGUaagCUGGA-GCCuuCGGCucUGG- -5'
9386 3' -54.3 NC_002512.2 + 157346 0.67 0.969298
Target:  5'- cCGUGUUCcGCCU-GGccGCCGAGGuCCg -3'
miRNA:   3'- -GCGUAAGcUGGAgCCuuCGGCUCU-GG- -5'
9386 3' -54.3 NC_002512.2 + 157809 0.68 0.963121
Target:  5'- uGCAggUCG-CUgCGGggGCCGGccgcGACCu -3'
miRNA:   3'- gCGUa-AGCuGGaGCCuuCGGCU----CUGG- -5'
9386 3' -54.3 NC_002512.2 + 158235 0.69 0.934858
Target:  5'- cCGCccaaGUUCGG-CUCGGuGGCCGAGuacACCc -3'
miRNA:   3'- -GCG----UAAGCUgGAGCCuUCGGCUC---UGG- -5'
9386 3' -54.3 NC_002512.2 + 159354 0.66 0.988238
Target:  5'- uGUA-UCGGCgUCGG-GGUCGGGGCg -3'
miRNA:   3'- gCGUaAGCUGgAGCCuUCGGCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 164207 0.7 0.913817
Target:  5'- uGCAg--GGCCUCGGGGccGCCGGGAa- -3'
miRNA:   3'- gCGUaagCUGGAGCCUU--CGGCUCUgg -5'
9386 3' -54.3 NC_002512.2 + 164244 0.67 0.979374
Target:  5'- gGUGUUCGgcGCCguggCGGggGCCGucgggucGAUCg -3'
miRNA:   3'- gCGUAAGC--UGGa---GCCuuCGGCu------CUGG- -5'
9386 3' -54.3 NC_002512.2 + 165642 0.75 0.673494
Target:  5'- uGCAUgagCG-CUUCGGggGCCuucccGAGGCCg -3'
miRNA:   3'- gCGUAa--GCuGGAGCCuuCGG-----CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 170839 0.68 0.952311
Target:  5'- aGCGgcggCGACC-CGGAcGUCGAGugUc -3'
miRNA:   3'- gCGUaa--GCUGGaGCCUuCGGCUCugG- -5'
9386 3' -54.3 NC_002512.2 + 174405 0.67 0.966309
Target:  5'- gCGCGUUC--CCgCGGc-GCCGGGGCCu -3'
miRNA:   3'- -GCGUAAGcuGGaGCCuuCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 177102 0.69 0.934858
Target:  5'- uGCGUcuccgCGACCa-GGAGGuCCGGGugCg -3'
miRNA:   3'- gCGUAa----GCUGGagCCUUC-GGCUCugG- -5'
9386 3' -54.3 NC_002512.2 + 180755 0.67 0.972093
Target:  5'- cCGCGUccgCGAUCUUGGcgugcAGCCGGGcgauGCCc -3'
miRNA:   3'- -GCGUAa--GCUGGAGCCu----UCGGCUC----UGG- -5'
9386 3' -54.3 NC_002512.2 + 182431 0.67 0.979374
Target:  5'- uGCGgaacUCGGCCUCGGccuccGCCGugcGGGCg -3'
miRNA:   3'- gCGUa---AGCUGGAGCCuu---CGGC---UCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.