miRNA display CGI


Results 81 - 100 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 3' -54.3 NC_002512.2 + 184022 0.68 0.958669
Target:  5'- aGUucuacgUCGACCUCGGuccGCUggucgaguucguguGAGACCg -3'
miRNA:   3'- gCGua----AGCUGGAGCCuu-CGG--------------CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 184773 0.67 0.972093
Target:  5'- gGUcgUCGACCccgaGGAcguGGCCcGGGCCu -3'
miRNA:   3'- gCGuaAGCUGGag--CCU---UCGGcUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 185363 0.69 0.924789
Target:  5'- uCGCcgUCGACUgcgacaccuUCGGcGGCggcugCGAGGCCg -3'
miRNA:   3'- -GCGuaAGCUGG---------AGCCuUCG-----GCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 185743 0.67 0.977124
Target:  5'- uCGUcgUCGACCUCuGGu--CCGucGACCu -3'
miRNA:   3'- -GCGuaAGCUGGAG-CCuucGGCu-CUGG- -5'
9386 3' -54.3 NC_002512.2 + 186472 0.69 0.944028
Target:  5'- uGCugcUCGGCCggCGGAucGCCGAGuucguCCa -3'
miRNA:   3'- gCGua-AGCUGGa-GCCUu-CGGCUCu----GG- -5'
9386 3' -54.3 NC_002512.2 + 186525 0.72 0.838102
Target:  5'- aGCG-UCGACCUCugcgugcacGggGCCGAGcCCu -3'
miRNA:   3'- gCGUaAGCUGGAGc--------CuuCGGCUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 188785 0.69 0.934858
Target:  5'- gGCGgcucCGGCCUCGGcGGCCccGAUCg -3'
miRNA:   3'- gCGUaa--GCUGGAGCCuUCGGcuCUGG- -5'
9386 3' -54.3 NC_002512.2 + 189041 0.67 0.972093
Target:  5'- uGuCGUUCGGuaauguCCUCGGAgcGGCCGGcGGCg -3'
miRNA:   3'- gC-GUAAGCU------GGAGCCU--UCGGCU-CUGg -5'
9386 3' -54.3 NC_002512.2 + 189214 0.66 0.981455
Target:  5'- gGCAUgcUCGACgUCGGAuccGuCCGucGCCg -3'
miRNA:   3'- gCGUA--AGCUGgAGCCUu--C-GGCucUGG- -5'
9386 3' -54.3 NC_002512.2 + 189637 0.7 0.90195
Target:  5'- uCGCggUCGGCUucgUCGGGAcgcGCCGAcACCg -3'
miRNA:   3'- -GCGuaAGCUGG---AGCCUU---CGGCUcUGG- -5'
9386 3' -54.3 NC_002512.2 + 189986 0.71 0.853677
Target:  5'- cCGCGUcuacaggaaggUCGACCUCaaguuGGccgcGGUCGAGGCCg -3'
miRNA:   3'- -GCGUA-----------AGCUGGAG-----CCu---UCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 190740 0.79 0.44293
Target:  5'- cCGUAc-UGAUCUCGGAGGCCGGGACg -3'
miRNA:   3'- -GCGUaaGCUGGAGCCUUCGGCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 193439 0.67 0.979156
Target:  5'- gCGCGaccgCGGCCgccgguggCGGGAGCgggcccuccgggaCGAGGCCc -3'
miRNA:   3'- -GCGUaa--GCUGGa-------GCCUUCG-------------GCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 195073 0.68 0.952311
Target:  5'- uCGUccggUCGGggaCUCGaGggGUCGAGGCCg -3'
miRNA:   3'- -GCGua--AGCUg--GAGC-CuuCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 195283 0.72 0.830047
Target:  5'- uCGCGUUCc-CCgCGGggGCCGGcGCCg -3'
miRNA:   3'- -GCGUAAGcuGGaGCCuuCGGCUcUGG- -5'
9386 3' -54.3 NC_002512.2 + 196416 0.71 0.861183
Target:  5'- aCGCGgggggcggCGGCCgggUCGGGagaGGUCGGGGCCa -3'
miRNA:   3'- -GCGUaa------GCUGG---AGCCU---UCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 196901 0.69 0.944028
Target:  5'- gGCGUcaUgGccaGCCUCauGGAGGCCGAGAgCa -3'
miRNA:   3'- gCGUA--AgC---UGGAG--CCUUCGGCUCUgG- -5'
9386 3' -54.3 NC_002512.2 + 200865 0.68 0.949918
Target:  5'- cCGCAUggcgUCGACCacgccgcccaccacgUCGuucagcguGAAcGCCGAGGCCg -3'
miRNA:   3'- -GCGUA----AGCUGG---------------AGC--------CUU-CGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 202504 0.74 0.722321
Target:  5'- aGCAgUUCGGCggCGGAGGCgGAGGCg -3'
miRNA:   3'- gCGU-AAGCUGgaGCCUUCGgCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 203969 0.66 0.985139
Target:  5'- aCGCAcaUCGACCUCauGGAccGGauCCG-GACCg -3'
miRNA:   3'- -GCGUa-AGCUGGAG--CCU--UC--GGCuCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.