miRNA display CGI


Results 101 - 120 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 3' -54.3 NC_002512.2 + 204757 0.66 0.986758
Target:  5'- aGCGauccCGGCCUgGGgcGCgGGGACg -3'
miRNA:   3'- gCGUaa--GCUGGAgCCuuCGgCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 204853 0.69 0.919416
Target:  5'- gGCggUCGGuCCUCguGGAGGuCCGcGACCg -3'
miRNA:   3'- gCGuaAGCU-GGAG--CCUUC-GGCuCUGG- -5'
9386 3' -54.3 NC_002512.2 + 208751 0.68 0.959377
Target:  5'- gGCAgUCGcCCa-GGAAGCCGAagcggaaGGCCa -3'
miRNA:   3'- gCGUaAGCuGGagCCUUCGGCU-------CUGG- -5'
9386 3' -54.3 NC_002512.2 + 208864 0.67 0.966309
Target:  5'- uCGCuuaaUCGGCaCUCGGGgggacgggaggGGCCGGGAauccCCg -3'
miRNA:   3'- -GCGua--AGCUG-GAGCCU-----------UCGGCUCU----GG- -5'
9386 3' -54.3 NC_002512.2 + 211265 0.67 0.979374
Target:  5'- aCGCcauGUUCGACCgcuuuugCGaGugcGCCGAGugCg -3'
miRNA:   3'- -GCG---UAAGCUGGa------GC-Cuu-CGGCUCugG- -5'
9386 3' -54.3 NC_002512.2 + 211985 0.72 0.821821
Target:  5'- gGCcgUCGuCCUCGG-GGCCGccGCCg -3'
miRNA:   3'- gCGuaAGCuGGAGCCuUCGGCucUGG- -5'
9386 3' -54.3 NC_002512.2 + 212425 0.69 0.924789
Target:  5'- gGCGggaggUCGAgUUCGGGccggccGGCCGcGACCg -3'
miRNA:   3'- gCGUa----AGCUgGAGCCU------UCGGCuCUGG- -5'
9386 3' -54.3 NC_002512.2 + 212998 0.68 0.956126
Target:  5'- uCGCcg-CGGCCgUCGGGc-CCGGGGCCc -3'
miRNA:   3'- -GCGuaaGCUGG-AGCCUucGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 213033 0.66 0.983374
Target:  5'- uGCGUccgcCGGCUgCGGggGaUCGAGAUCg -3'
miRNA:   3'- gCGUAa---GCUGGaGCCuuC-GGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 213713 0.68 0.955754
Target:  5'- gGCuucUUCGACgUCGGA-GCUGAcgacguuGACCg -3'
miRNA:   3'- gCGu--AAGCUGgAGCCUuCGGCU-------CUGG- -5'
9386 3' -54.3 NC_002512.2 + 214849 0.76 0.613927
Target:  5'- gCGC-UUCGACCU-GGAGGCCcaGGACCu -3'
miRNA:   3'- -GCGuAAGCUGGAgCCUUCGGc-UCUGG- -5'
9386 3' -54.3 NC_002512.2 + 216214 0.68 0.963121
Target:  5'- gGCcgUCG-CCUcgucCGGGAGCUGGaGCCg -3'
miRNA:   3'- gCGuaAGCuGGA----GCCUUCGGCUcUGG- -5'
9386 3' -54.3 NC_002512.2 + 217590 0.66 0.985139
Target:  5'- gGCGgcgCcGCCUCGGggGUCGucGGCg -3'
miRNA:   3'- gCGUaa-GcUGGAGCCuuCGGCu-CUGg -5'
9386 3' -54.3 NC_002512.2 + 218746 0.66 0.982815
Target:  5'- gCGCGUgucCGGcCCUCGGAcuccucGGUuccccguccggggaCGAGGCCg -3'
miRNA:   3'- -GCGUAa--GCU-GGAGCCU------UCG--------------GCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 219216 0.71 0.853677
Target:  5'- uGCcgggcCGGCCUCGGcgAGGUCGGGAUCg -3'
miRNA:   3'- gCGuaa--GCUGGAGCC--UUCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 219705 0.66 0.988238
Target:  5'- aGCG-UCGGCgCUCGGGGcGCgaGAGGCg -3'
miRNA:   3'- gCGUaAGCUG-GAGCCUU-CGg-CUCUGg -5'
9386 3' -54.3 NC_002512.2 + 219744 0.66 0.981455
Target:  5'- uCGC---CGACCUCuucuGCUGAGGCCg -3'
miRNA:   3'- -GCGuaaGCUGGAGccuuCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 220731 0.7 0.907995
Target:  5'- gGC-UUCGACCUCcaccucauGGAGcgcugggccGUCGAGGCCg -3'
miRNA:   3'- gCGuAAGCUGGAG--------CCUU---------CGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 220871 0.7 0.905604
Target:  5'- cCGCGg--GGCCUCGGcgcucuccaucguGGCCGAcGACCu -3'
miRNA:   3'- -GCGUaagCUGGAGCCu------------UCGGCU-CUGG- -5'
9386 3' -54.3 NC_002512.2 + 221174 0.76 0.64375
Target:  5'- gCGCGgccgacCGACCUCGGAguGGaCGGGACCc -3'
miRNA:   3'- -GCGUaa----GCUGGAGCCU--UCgGCUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.