miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 3' -54.3 NC_002512.2 + 190740 0.79 0.44293
Target:  5'- cCGUAc-UGAUCUCGGAGGCCGGGACg -3'
miRNA:   3'- -GCGUaaGCUGGAGCCUUCGGCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 189986 0.71 0.853677
Target:  5'- cCGCGUcuacaggaaggUCGACCUCaaguuGGccgcGGUCGAGGCCg -3'
miRNA:   3'- -GCGUA-----------AGCUGGAG-----CCu---UCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 189637 0.7 0.90195
Target:  5'- uCGCggUCGGCUucgUCGGGAcgcGCCGAcACCg -3'
miRNA:   3'- -GCGuaAGCUGG---AGCCUU---CGGCUcUGG- -5'
9386 3' -54.3 NC_002512.2 + 189214 0.66 0.981455
Target:  5'- gGCAUgcUCGACgUCGGAuccGuCCGucGCCg -3'
miRNA:   3'- gCGUA--AGCUGgAGCCUu--C-GGCucUGG- -5'
9386 3' -54.3 NC_002512.2 + 189041 0.67 0.972093
Target:  5'- uGuCGUUCGGuaauguCCUCGGAgcGGCCGGcGGCg -3'
miRNA:   3'- gC-GUAAGCU------GGAGCCU--UCGGCU-CUGg -5'
9386 3' -54.3 NC_002512.2 + 188785 0.69 0.934858
Target:  5'- gGCGgcucCGGCCUCGGcGGCCccGAUCg -3'
miRNA:   3'- gCGUaa--GCUGGAGCCuUCGGcuCUGG- -5'
9386 3' -54.3 NC_002512.2 + 186525 0.72 0.838102
Target:  5'- aGCG-UCGACCUCugcgugcacGggGCCGAGcCCu -3'
miRNA:   3'- gCGUaAGCUGGAGc--------CuuCGGCUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 186472 0.69 0.944028
Target:  5'- uGCugcUCGGCCggCGGAucGCCGAGuucguCCa -3'
miRNA:   3'- gCGua-AGCUGGa-GCCUu-CGGCUCu----GG- -5'
9386 3' -54.3 NC_002512.2 + 185743 0.67 0.977124
Target:  5'- uCGUcgUCGACCUCuGGu--CCGucGACCu -3'
miRNA:   3'- -GCGuaAGCUGGAG-CCuucGGCu-CUGG- -5'
9386 3' -54.3 NC_002512.2 + 185363 0.69 0.924789
Target:  5'- uCGCcgUCGACUgcgacaccuUCGGcGGCggcugCGAGGCCg -3'
miRNA:   3'- -GCGuaAGCUGG---------AGCCuUCG-----GCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 184773 0.67 0.972093
Target:  5'- gGUcgUCGACCccgaGGAcguGGCCcGGGCCu -3'
miRNA:   3'- gCGuaAGCUGGag--CCU---UCGGcUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 184022 0.68 0.958669
Target:  5'- aGUucuacgUCGACCUCGGuccGCUggucgaguucguguGAGACCg -3'
miRNA:   3'- gCGua----AGCUGGAGCCuu-CGG--------------CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 182431 0.67 0.979374
Target:  5'- uGCGgaacUCGGCCUCGGccuccGCCGugcGGGCg -3'
miRNA:   3'- gCGUa---AGCUGGAGCCuu---CGGC---UCUGg -5'
9386 3' -54.3 NC_002512.2 + 180755 0.67 0.972093
Target:  5'- cCGCGUccgCGAUCUUGGcgugcAGCCGGGcgauGCCc -3'
miRNA:   3'- -GCGUAa--GCUGGAGCCu----UCGGCUC----UGG- -5'
9386 3' -54.3 NC_002512.2 + 177102 0.69 0.934858
Target:  5'- uGCGUcuccgCGACCa-GGAGGuCCGGGugCg -3'
miRNA:   3'- gCGUAa----GCUGGagCCUUC-GGCUCugG- -5'
9386 3' -54.3 NC_002512.2 + 174405 0.67 0.966309
Target:  5'- gCGCGUUC--CCgCGGc-GCCGGGGCCu -3'
miRNA:   3'- -GCGUAAGcuGGaGCCuuCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 170839 0.68 0.952311
Target:  5'- aGCGgcggCGACC-CGGAcGUCGAGugUc -3'
miRNA:   3'- gCGUaa--GCUGGaGCCUuCGGCUCugG- -5'
9386 3' -54.3 NC_002512.2 + 165642 0.75 0.673494
Target:  5'- uGCAUgagCG-CUUCGGggGCCuucccGAGGCCg -3'
miRNA:   3'- gCGUAa--GCuGGAGCCuuCGG-----CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 164244 0.67 0.979374
Target:  5'- gGUGUUCGgcGCCguggCGGggGCCGucgggucGAUCg -3'
miRNA:   3'- gCGUAAGC--UGGa---GCCuuCGGCu------CUGG- -5'
9386 3' -54.3 NC_002512.2 + 164207 0.7 0.913817
Target:  5'- uGCAg--GGCCUCGGGGccGCCGGGAa- -3'
miRNA:   3'- gCGUaagCUGGAGCCUU--CGGCUCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.