miRNA display CGI


Results 81 - 100 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 3' -54.3 NC_002512.2 + 131993 0.68 0.959728
Target:  5'- uCGCGUg-GGCCgcccCGGgcGCCGgggGGACCu -3'
miRNA:   3'- -GCGUAagCUGGa---GCCuuCGGC---UCUGG- -5'
9386 3' -54.3 NC_002512.2 + 131220 0.7 0.907995
Target:  5'- gGCGcUCGACgucgcggUCGGAGGCCGcgguGGCCu -3'
miRNA:   3'- gCGUaAGCUGg------AGCCUUCGGCu---CUGG- -5'
9386 3' -54.3 NC_002512.2 + 131150 0.72 0.845981
Target:  5'- gGCAgggCGGCCgagaGGAagcGGCCGAGcCCg -3'
miRNA:   3'- gCGUaa-GCUGGag--CCU---UCGGCUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 130965 0.68 0.948279
Target:  5'- cCGCcUUauaucgggaGACCUCGGAGGagGAGAUCg -3'
miRNA:   3'- -GCGuAAg--------CUGGAGCCUUCggCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 130590 0.75 0.653684
Target:  5'- gGCcg-CGGCCUCGGAGGCgGAGGa- -3'
miRNA:   3'- gCGuaaGCUGGAGCCUUCGgCUCUgg -5'
9386 3' -54.3 NC_002512.2 + 130203 0.67 0.969298
Target:  5'- uCGCAUgaUCGGCCagugguccUCGGcGGCgGGGAaCCu -3'
miRNA:   3'- -GCGUA--AGCUGG--------AGCCuUCGgCUCU-GG- -5'
9386 3' -54.3 NC_002512.2 + 129497 0.7 0.907995
Target:  5'- aCGCucuccgCGGCCg-GGAAGUCGGGAgCCg -3'
miRNA:   3'- -GCGuaa---GCUGGagCCUUCGGCUCU-GG- -5'
9386 3' -54.3 NC_002512.2 + 127898 0.69 0.934858
Target:  5'- gGUAcUCGACCgUCGGAucGGCCacGAGcCCg -3'
miRNA:   3'- gCGUaAGCUGG-AGCCU--UCGG--CUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 127756 0.7 0.895686
Target:  5'- cCGUAgaCGGCCa-GGGucccccuccgacGGCCGAGGCCg -3'
miRNA:   3'- -GCGUaaGCUGGagCCU------------UCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 126364 0.69 0.939555
Target:  5'- aCGCGUUCacgguccucuGGCCgccCGGGAGagcgcCCGGGGCCc -3'
miRNA:   3'- -GCGUAAG----------CUGGa--GCCUUC-----GGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 124341 0.7 0.901334
Target:  5'- uGCGgcuguaccugaucUUCGACCccCGGgcGCCGGGGuCCa -3'
miRNA:   3'- gCGU-------------AAGCUGGa-GCCuuCGGCUCU-GG- -5'
9386 3' -54.3 NC_002512.2 + 124292 0.69 0.929936
Target:  5'- gGCGUgcggcUCGACCgCGcGGAGCugauCGGGGCCg -3'
miRNA:   3'- gCGUA-----AGCUGGaGC-CUUCG----GCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 123125 0.67 0.974699
Target:  5'- cCGCGggcCGagaGCCggacgCGGAGcgccGCCGGGGCCg -3'
miRNA:   3'- -GCGUaa-GC---UGGa----GCCUU----CGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 121433 0.66 0.986758
Target:  5'- cCGCGgagUCGGCCcCGGA-GCCcugaGGGGuCCg -3'
miRNA:   3'- -GCGUa--AGCUGGaGCCUuCGG----CUCU-GG- -5'
9386 3' -54.3 NC_002512.2 + 121021 0.74 0.754542
Target:  5'- gGCGUgcuGACCUCGGGcgagcgcgaccucugGGCCGGGuACCc -3'
miRNA:   3'- gCGUAag-CUGGAGCCU---------------UCGGCUC-UGG- -5'
9386 3' -54.3 NC_002512.2 + 119952 0.73 0.778404
Target:  5'- aCGCggUgGACUUCGuGgcGCUGGGGCCg -3'
miRNA:   3'- -GCGuaAgCUGGAGC-CuuCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 119104 0.71 0.875604
Target:  5'- uGCGggCGGCCUCGGcgcAGCUGcGGACg -3'
miRNA:   3'- gCGUaaGCUGGAGCCu--UCGGC-UCUGg -5'
9386 3' -54.3 NC_002512.2 + 118551 0.66 0.983374
Target:  5'- aCGCggUCG-CgUCGGAcGUCGGGAgCg -3'
miRNA:   3'- -GCGuaAGCuGgAGCCUuCGGCUCUgG- -5'
9386 3' -54.3 NC_002512.2 + 117867 0.7 0.889204
Target:  5'- uGaCGUUCGGCCgcaagaCGGAcGCCgGGGGCCc -3'
miRNA:   3'- gC-GUAAGCUGGa-----GCCUuCGG-CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 113560 0.67 0.977124
Target:  5'- gGCGaagaCGACCUCGaaGAAGUCGcggguGACCg -3'
miRNA:   3'- gCGUaa--GCUGGAGC--CUUCGGCu----CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.