miRNA display CGI


Results 41 - 60 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 3' -54.3 NC_002512.2 + 121433 0.66 0.986758
Target:  5'- cCGCGgagUCGGCCcCGGA-GCCcugaGGGGuCCg -3'
miRNA:   3'- -GCGUa--AGCUGGaGCCUuCGG----CUCU-GG- -5'
9386 3' -54.3 NC_002512.2 + 89415 0.66 0.987808
Target:  5'- gCGCGgaaccaGGCCUCGGgcGUCGgcggggucacguccGGGCCc -3'
miRNA:   3'- -GCGUaag---CUGGAGCCuuCGGC--------------UCUGG- -5'
9386 3' -54.3 NC_002512.2 + 159354 0.66 0.988238
Target:  5'- uGUA-UCGGCgUCGG-GGUCGGGGCg -3'
miRNA:   3'- gCGUaAGCUGgAGCCuUCGGCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 219705 0.66 0.988238
Target:  5'- aGCG-UCGGCgCUCGGGGcGCgaGAGGCg -3'
miRNA:   3'- gCGUaAGCUG-GAGCCUU-CGg-CUCUGg -5'
9386 3' -54.3 NC_002512.2 + 105621 0.66 0.988238
Target:  5'- gGCAc-CGGCCgucgUCGGucuCCGAGACCc -3'
miRNA:   3'- gCGUaaGCUGG----AGCCuucGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 213033 0.66 0.983374
Target:  5'- uGCGUccgcCGGCUgCGGggGaUCGAGAUCg -3'
miRNA:   3'- gCGUAa---GCUGGaGCCuuC-GGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 103293 0.66 0.983374
Target:  5'- cCGCugaggagcCGGCCgucguaGGAcaggacGGCCGAGGCCc -3'
miRNA:   3'- -GCGuaa-----GCUGGag----CCU------UCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 140888 0.67 0.979374
Target:  5'- cCGCAcucuuccgUCGGCCcccCGGccacgAAGCCgGAGACCc -3'
miRNA:   3'- -GCGUa-------AGCUGGa--GCC-----UUCGG-CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 156835 0.67 0.979374
Target:  5'- uGCGa--GGCCUgCGGggGCCGcuGCUg -3'
miRNA:   3'- gCGUaagCUGGA-GCCuuCGGCucUGG- -5'
9386 3' -54.3 NC_002512.2 + 182431 0.67 0.979374
Target:  5'- uGCGgaacUCGGCCUCGGccuccGCCGugcGGGCg -3'
miRNA:   3'- gCGUa---AGCUGGAGCCuu---CGGC---UCUGg -5'
9386 3' -54.3 NC_002512.2 + 225973 0.67 0.979374
Target:  5'- aCGacgaCGACCggucUCGGggGCaagGGGACCg -3'
miRNA:   3'- -GCguaaGCUGG----AGCCuuCGg--CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 211265 0.67 0.979374
Target:  5'- aCGCcauGUUCGACCgcuuuugCGaGugcGCCGAGugCg -3'
miRNA:   3'- -GCG---UAAGCUGGa------GC-Cuu-CGGCUCugG- -5'
9386 3' -54.3 NC_002512.2 + 77086 0.67 0.980226
Target:  5'- cCGCcgUCgccgcgGACCUccgagaCGGAGGCCcggcggucaucgauaGAGACCu -3'
miRNA:   3'- -GCGuaAG------CUGGA------GCCUUCGG---------------CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 224679 0.67 0.980226
Target:  5'- cCGCcgUCGGCUggcccgCGGuccugcccgcccuGCUGGGGCCg -3'
miRNA:   3'- -GCGuaAGCUGGa-----GCCuu-----------CGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 189214 0.66 0.981455
Target:  5'- gGCAUgcUCGACgUCGGAuccGuCCGucGCCg -3'
miRNA:   3'- gCGUA--AGCUGgAGCCUu--C-GGCucUGG- -5'
9386 3' -54.3 NC_002512.2 + 219744 0.66 0.981455
Target:  5'- uCGC---CGACCUCuucuGCUGAGGCCg -3'
miRNA:   3'- -GCGuaaGCUGGAGccuuCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 223260 0.66 0.981455
Target:  5'- gGCGUccgCGuCgUCGGggGgCGGGACg -3'
miRNA:   3'- gCGUAa--GCuGgAGCCuuCgGCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 218746 0.66 0.982815
Target:  5'- gCGCGUgucCGGcCCUCGGAcuccucGGUuccccguccggggaCGAGGCCg -3'
miRNA:   3'- -GCGUAa--GCU-GGAGCCU------UCG--------------GCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 146957 0.66 0.983374
Target:  5'- aGCg--CGACgaCGGcGGCCGcGGCCg -3'
miRNA:   3'- gCGuaaGCUGgaGCCuUCGGCuCUGG- -5'
9386 3' -54.3 NC_002512.2 + 94044 0.66 0.983374
Target:  5'- gGCGgugacggCGACCg-GGAagGGCgCGGGACCc -3'
miRNA:   3'- gCGUaa-----GCUGGagCCU--UCG-GCUCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.