Results 41 - 60 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 121433 | 0.66 | 0.986758 |
Target: 5'- cCGCGgagUCGGCCcCGGA-GCCcugaGGGGuCCg -3' miRNA: 3'- -GCGUa--AGCUGGaGCCUuCGG----CUCU-GG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 89415 | 0.66 | 0.987808 |
Target: 5'- gCGCGgaaccaGGCCUCGGgcGUCGgcggggucacguccGGGCCc -3' miRNA: 3'- -GCGUaag---CUGGAGCCuuCGGC--------------UCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 159354 | 0.66 | 0.988238 |
Target: 5'- uGUA-UCGGCgUCGG-GGUCGGGGCg -3' miRNA: 3'- gCGUaAGCUGgAGCCuUCGGCUCUGg -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 219705 | 0.66 | 0.988238 |
Target: 5'- aGCG-UCGGCgCUCGGGGcGCgaGAGGCg -3' miRNA: 3'- gCGUaAGCUG-GAGCCUU-CGg-CUCUGg -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 105621 | 0.66 | 0.988238 |
Target: 5'- gGCAc-CGGCCgucgUCGGucuCCGAGACCc -3' miRNA: 3'- gCGUaaGCUGG----AGCCuucGGCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 213033 | 0.66 | 0.983374 |
Target: 5'- uGCGUccgcCGGCUgCGGggGaUCGAGAUCg -3' miRNA: 3'- gCGUAa---GCUGGaGCCuuC-GGCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 103293 | 0.66 | 0.983374 |
Target: 5'- cCGCugaggagcCGGCCgucguaGGAcaggacGGCCGAGGCCc -3' miRNA: 3'- -GCGuaa-----GCUGGag----CCU------UCGGCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 140888 | 0.67 | 0.979374 |
Target: 5'- cCGCAcucuuccgUCGGCCcccCGGccacgAAGCCgGAGACCc -3' miRNA: 3'- -GCGUa-------AGCUGGa--GCC-----UUCGG-CUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 156835 | 0.67 | 0.979374 |
Target: 5'- uGCGa--GGCCUgCGGggGCCGcuGCUg -3' miRNA: 3'- gCGUaagCUGGA-GCCuuCGGCucUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 182431 | 0.67 | 0.979374 |
Target: 5'- uGCGgaacUCGGCCUCGGccuccGCCGugcGGGCg -3' miRNA: 3'- gCGUa---AGCUGGAGCCuu---CGGC---UCUGg -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 225973 | 0.67 | 0.979374 |
Target: 5'- aCGacgaCGACCggucUCGGggGCaagGGGACCg -3' miRNA: 3'- -GCguaaGCUGG----AGCCuuCGg--CUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 211265 | 0.67 | 0.979374 |
Target: 5'- aCGCcauGUUCGACCgcuuuugCGaGugcGCCGAGugCg -3' miRNA: 3'- -GCG---UAAGCUGGa------GC-Cuu-CGGCUCugG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 77086 | 0.67 | 0.980226 |
Target: 5'- cCGCcgUCgccgcgGACCUccgagaCGGAGGCCcggcggucaucgauaGAGACCu -3' miRNA: 3'- -GCGuaAG------CUGGA------GCCUUCGG---------------CUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 224679 | 0.67 | 0.980226 |
Target: 5'- cCGCcgUCGGCUggcccgCGGuccugcccgcccuGCUGGGGCCg -3' miRNA: 3'- -GCGuaAGCUGGa-----GCCuu-----------CGGCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 189214 | 0.66 | 0.981455 |
Target: 5'- gGCAUgcUCGACgUCGGAuccGuCCGucGCCg -3' miRNA: 3'- gCGUA--AGCUGgAGCCUu--C-GGCucUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 219744 | 0.66 | 0.981455 |
Target: 5'- uCGC---CGACCUCuucuGCUGAGGCCg -3' miRNA: 3'- -GCGuaaGCUGGAGccuuCGGCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 223260 | 0.66 | 0.981455 |
Target: 5'- gGCGUccgCGuCgUCGGggGgCGGGACg -3' miRNA: 3'- gCGUAa--GCuGgAGCCuuCgGCUCUGg -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 218746 | 0.66 | 0.982815 |
Target: 5'- gCGCGUgucCGGcCCUCGGAcuccucGGUuccccguccggggaCGAGGCCg -3' miRNA: 3'- -GCGUAa--GCU-GGAGCCU------UCG--------------GCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 146957 | 0.66 | 0.983374 |
Target: 5'- aGCg--CGACgaCGGcGGCCGcGGCCg -3' miRNA: 3'- gCGuaaGCUGgaGCCuUCGGCuCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 94044 | 0.66 | 0.983374 |
Target: 5'- gGCGgugacggCGACCg-GGAagGGCgCGGGACCc -3' miRNA: 3'- gCGUaa-----GCUGGagCCU--UCG-GCUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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