Results 81 - 100 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9386 | 3' | -54.3 | NC_002512.2 | + | 33273 | 0.67 | 0.972093 |
Target: 5'- -----aCGACCUCGGAAcgaucGCUGAagaaGACCg -3' miRNA: 3'- gcguaaGCUGGAGCCUU-----CGGCU----CUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 225732 | 0.67 | 0.971822 |
Target: 5'- cCGCgg-CGACUcgcucagUCGGGgcgcGGCCGGGACa -3' miRNA: 3'- -GCGuaaGCUGG-------AGCCU----UCGGCUCUGg -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 157346 | 0.67 | 0.969298 |
Target: 5'- cCGUGUUCcGCCU-GGccGCCGAGGuCCg -3' miRNA: 3'- -GCGUAAGcUGGAgCCuuCGGCUCU-GG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 130203 | 0.67 | 0.969298 |
Target: 5'- uCGCAUgaUCGGCCagugguccUCGGcGGCgGGGAaCCu -3' miRNA: 3'- -GCGUA--AGCUGG--------AGCCuUCGgCUCU-GG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 76093 | 0.67 | 0.969298 |
Target: 5'- -----cCGGCgaUCGGAAGCUGAGGCg -3' miRNA: 3'- gcguaaGCUGg-AGCCUUCGGCUCUGg -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 95834 | 0.67 | 0.969298 |
Target: 5'- gGCGa-CGGCCcgcaGGAGGCCGGGGgCg -3' miRNA: 3'- gCGUaaGCUGGag--CCUUCGGCUCUgG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 96526 | 0.67 | 0.969298 |
Target: 5'- aGCcg-CG-CCggCGGuguGAGCCGGGGCCg -3' miRNA: 3'- gCGuaaGCuGGa-GCC---UUCGGCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 180755 | 0.67 | 0.972093 |
Target: 5'- cCGCGUccgCGAUCUUGGcgugcAGCCGGGcgauGCCc -3' miRNA: 3'- -GCGUAa--GCUGGAGCCu----UCGGCUC----UGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 189041 | 0.67 | 0.972093 |
Target: 5'- uGuCGUUCGGuaauguCCUCGGAgcGGCCGGcGGCg -3' miRNA: 3'- gC-GUAAGCU------GGAGCCU--UCGGCU-CUGg -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 77348 | 0.67 | 0.974447 |
Target: 5'- --gGUUCG-CCuucgUCGGAAcgccgucGCCGAGACCc -3' miRNA: 3'- gcgUAAGCuGG----AGCCUU-------CGGCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 182431 | 0.67 | 0.979374 |
Target: 5'- uGCGgaacUCGGCCUCGGccuccGCCGugcGGGCg -3' miRNA: 3'- gCGUa---AGCUGGAGCCuu---CGGC---UCUGg -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 156835 | 0.67 | 0.979374 |
Target: 5'- uGCGa--GGCCUgCGGggGCCGcuGCUg -3' miRNA: 3'- gCGUaagCUGGA-GCCuuCGGCucUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 140888 | 0.67 | 0.979374 |
Target: 5'- cCGCAcucuuccgUCGGCCcccCGGccacgAAGCCgGAGACCc -3' miRNA: 3'- -GCGUa-------AGCUGGa--GCC-----UUCGG-CUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 164244 | 0.67 | 0.979374 |
Target: 5'- gGUGUUCGgcGCCguggCGGggGCCGucgggucGAUCg -3' miRNA: 3'- gCGUAAGC--UGGa---GCCuuCGGCu------CUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 147420 | 0.67 | 0.979374 |
Target: 5'- gGCGUcUgGGCCccuuccccgccuUCGGGAGC-GGGACCg -3' miRNA: 3'- gCGUA-AgCUGG------------AGCCUUCGgCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 193439 | 0.67 | 0.979156 |
Target: 5'- gCGCGaccgCGGCCgccgguggCGGGAGCgggcccuccgggaCGAGGCCc -3' miRNA: 3'- -GCGUaa--GCUGGa-------GCCUUCG-------------GCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 185743 | 0.67 | 0.977124 |
Target: 5'- uCGUcgUCGACCUCuGGu--CCGucGACCu -3' miRNA: 3'- -GCGuaAGCUGGAG-CCuucGGCu-CUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 146794 | 0.67 | 0.977124 |
Target: 5'- cCGCcg--GACC-CGGAGGaggcCCGGGACCu -3' miRNA: 3'- -GCGuaagCUGGaGCCUUC----GGCUCUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 113560 | 0.67 | 0.977124 |
Target: 5'- gGCGaagaCGACCUCGaaGAAGUCGcggguGACCg -3' miRNA: 3'- gCGUaa--GCUGGAGC--CUUCGGCu----CUGG- -5' |
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9386 | 3' | -54.3 | NC_002512.2 | + | 123125 | 0.67 | 0.974699 |
Target: 5'- cCGCGggcCGagaGCCggacgCGGAGcgccGCCGGGGCCg -3' miRNA: 3'- -GCGUaa-GC---UGGa----GCCUU----CGGCUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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