miRNA display CGI


Results 101 - 120 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 3' -54.3 NC_002512.2 + 96208 0.68 0.963121
Target:  5'- cCGCGaggUCGGCCaCGGcGGCCGcGGCg -3'
miRNA:   3'- -GCGUa--AGCUGGaGCCuUCGGCuCUGg -5'
9386 3' -54.3 NC_002512.2 + 216214 0.68 0.963121
Target:  5'- gGCcgUCG-CCUcgucCGGGAGCUGGaGCCg -3'
miRNA:   3'- gCGuaAGCuGGA----GCCUUCGGCUcUGG- -5'
9386 3' -54.3 NC_002512.2 + 157809 0.68 0.963121
Target:  5'- uGCAggUCG-CUgCGGggGCCGGccgcGACCu -3'
miRNA:   3'- gCGUa-AGCuGGaGCCuuCGGCU----CUGG- -5'
9386 3' -54.3 NC_002512.2 + 131993 0.68 0.959728
Target:  5'- uCGCGUg-GGCCgcccCGGgcGCCGgggGGACCu -3'
miRNA:   3'- -GCGUAagCUGGa---GCCuuCGGC---UCUGG- -5'
9386 3' -54.3 NC_002512.2 + 89667 0.68 0.959728
Target:  5'- aCGUAcUCGacguGCCUCGGGgagAGCgGcAGGCCg -3'
miRNA:   3'- -GCGUaAGC----UGGAGCCU---UCGgC-UCUGG- -5'
9386 3' -54.3 NC_002512.2 + 130203 0.67 0.969298
Target:  5'- uCGCAUgaUCGGCCagugguccUCGGcGGCgGGGAaCCu -3'
miRNA:   3'- -GCGUA--AGCUGG--------AGCCuUCGgCUCU-GG- -5'
9386 3' -54.3 NC_002512.2 + 157346 0.67 0.969298
Target:  5'- cCGUGUUCcGCCU-GGccGCCGAGGuCCg -3'
miRNA:   3'- -GCGUAAGcUGGAgCCuuCGGCUCU-GG- -5'
9386 3' -54.3 NC_002512.2 + 193439 0.67 0.979156
Target:  5'- gCGCGaccgCGGCCgccgguggCGGGAGCgggcccuccgggaCGAGGCCc -3'
miRNA:   3'- -GCGUaa--GCUGGa-------GCCUUCG-------------GCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 185743 0.67 0.977124
Target:  5'- uCGUcgUCGACCUCuGGu--CCGucGACCu -3'
miRNA:   3'- -GCGuaAGCUGGAG-CCuucGGCu-CUGG- -5'
9386 3' -54.3 NC_002512.2 + 146794 0.67 0.977124
Target:  5'- cCGCcg--GACC-CGGAGGaggcCCGGGACCu -3'
miRNA:   3'- -GCGuaagCUGGaGCCUUC----GGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 113560 0.67 0.977124
Target:  5'- gGCGaagaCGACCUCGaaGAAGUCGcggguGACCg -3'
miRNA:   3'- gCGUaa--GCUGGAGC--CUUCGGCu----CUGG- -5'
9386 3' -54.3 NC_002512.2 + 123125 0.67 0.974699
Target:  5'- cCGCGggcCGagaGCCggacgCGGAGcgccGCCGGGGCCg -3'
miRNA:   3'- -GCGUaa-GC---UGGa----GCCUU----CGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 77348 0.67 0.974447
Target:  5'- --gGUUCG-CCuucgUCGGAAcgccgucGCCGAGACCc -3'
miRNA:   3'- gcgUAAGCuGG----AGCCUU-------CGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 189041 0.67 0.972093
Target:  5'- uGuCGUUCGGuaauguCCUCGGAgcGGCCGGcGGCg -3'
miRNA:   3'- gC-GUAAGCU------GGAGCCU--UCGGCU-CUGg -5'
9386 3' -54.3 NC_002512.2 + 180755 0.67 0.972093
Target:  5'- cCGCGUccgCGAUCUUGGcgugcAGCCGGGcgauGCCc -3'
miRNA:   3'- -GCGUAa--GCUGGAGCCu----UCGGCUC----UGG- -5'
9386 3' -54.3 NC_002512.2 + 132027 0.67 0.972093
Target:  5'- gGCgg-CGACgUCGucGGCCaGGGACCg -3'
miRNA:   3'- gCGuaaGCUGgAGCcuUCGG-CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 184773 0.67 0.972093
Target:  5'- gGUcgUCGACCccgaGGAcguGGCCcGGGCCu -3'
miRNA:   3'- gCGuaAGCUGGag--CCU---UCGGcUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 152610 0.67 0.972093
Target:  5'- gGguUUCGAgCUCcGggGCCGGGGa- -3'
miRNA:   3'- gCguAAGCUgGAGcCuuCGGCUCUgg -5'
9386 3' -54.3 NC_002512.2 + 33273 0.67 0.972093
Target:  5'- -----aCGACCUCGGAAcgaucGCUGAagaaGACCg -3'
miRNA:   3'- gcguaaGCUGGAGCCUU-----CGGCU----CUGG- -5'
9386 3' -54.3 NC_002512.2 + 225732 0.67 0.971822
Target:  5'- cCGCgg-CGACUcgcucagUCGGGgcgcGGCCGGGACa -3'
miRNA:   3'- -GCGuaaGCUGG-------AGCCU----UCGGCUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.