miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9387 5' -59.8 NC_002512.2 + 140144 0.66 0.842902
Target:  5'- cGCGgGAaccUCuCCCACgACCuccgGUCCcaAGGUCa -3'
miRNA:   3'- -CGCgCU---AG-GGGUGgUGG----CAGG--UCCAG- -5'
9387 5' -59.8 NC_002512.2 + 153313 0.66 0.842902
Target:  5'- gGC-CGGUUCCCGcuggggugguuCCGCUgggccgGUCCGGGUCg -3'
miRNA:   3'- -CGcGCUAGGGGU-----------GGUGG------CAGGUCCAG- -5'
9387 5' -59.8 NC_002512.2 + 220367 0.66 0.842902
Target:  5'- cCGUGG-CCgCCGCCGCCGUgCUGGGg- -3'
miRNA:   3'- cGCGCUaGG-GGUGGUGGCA-GGUCCag -5'
9387 5' -59.8 NC_002512.2 + 94738 0.66 0.83519
Target:  5'- -gGCGAaCCCCGCC-CgGUCgCAGG-Cg -3'
miRNA:   3'- cgCGCUaGGGGUGGuGgCAG-GUCCaG- -5'
9387 5' -59.8 NC_002512.2 + 154678 0.66 0.83519
Target:  5'- cGgGCGAccgUCCgCUccgaGCgGCCGUCCGGcGUCg -3'
miRNA:   3'- -CgCGCU---AGG-GG----UGgUGGCAGGUC-CAG- -5'
9387 5' -59.8 NC_002512.2 + 186955 0.66 0.83519
Target:  5'- gGCGgaGAUCCcCCGCUcccggGCCGUCCuGG-Cg -3'
miRNA:   3'- -CGCg-CUAGG-GGUGG-----UGGCAGGuCCaG- -5'
9387 5' -59.8 NC_002512.2 + 132527 0.66 0.83519
Target:  5'- cCGCGGUCCCCGCUccgcgggcggcGCCGUC--GGcCu -3'
miRNA:   3'- cGCGCUAGGGGUGG-----------UGGCAGguCCaG- -5'
9387 5' -59.8 NC_002512.2 + 175581 0.66 0.83519
Target:  5'- gGCG-GGUCaCCACguCGCCGUgCGGGUCc -3'
miRNA:   3'- -CGCgCUAGgGGUG--GUGGCAgGUCCAG- -5'
9387 5' -59.8 NC_002512.2 + 185474 0.66 0.83519
Target:  5'- cCGUGGU-CCUGCCGCCG--CAGGUCa -3'
miRNA:   3'- cGCGCUAgGGGUGGUGGCagGUCCAG- -5'
9387 5' -59.8 NC_002512.2 + 209084 0.66 0.83519
Target:  5'- cGUGCGGgagCCCGa---CGUCCGGGUCg -3'
miRNA:   3'- -CGCGCUag-GGGUggugGCAGGUCCAG- -5'
9387 5' -59.8 NC_002512.2 + 173616 0.67 0.827314
Target:  5'- aGCGgGAgcgCCuCCGCCGCgGcggcgaaccCCGGGUCg -3'
miRNA:   3'- -CGCgCUa--GG-GGUGGUGgCa--------GGUCCAG- -5'
9387 5' -59.8 NC_002512.2 + 179280 0.67 0.827314
Target:  5'- cGUGUcGUCCCCGgauCgCACCGUCCAG-UCc -3'
miRNA:   3'- -CGCGcUAGGGGU---G-GUGGCAGGUCcAG- -5'
9387 5' -59.8 NC_002512.2 + 218424 0.67 0.824119
Target:  5'- uCGCGGUCUCCGCCccuuccccggcccCCGUCCGcGG-Cg -3'
miRNA:   3'- cGCGCUAGGGGUGGu------------GGCAGGU-CCaG- -5'
9387 5' -59.8 NC_002512.2 + 161943 0.67 0.81928
Target:  5'- gGCGCGA-CCCCuCU-CCGUCCGGa-- -3'
miRNA:   3'- -CGCGCUaGGGGuGGuGGCAGGUCcag -5'
9387 5' -59.8 NC_002512.2 + 177099 0.67 0.81928
Target:  5'- cGCuGCG-UCUCCGCgACCaggagGUCCGGGUg -3'
miRNA:   3'- -CG-CGCuAGGGGUGgUGG-----CAGGUCCAg -5'
9387 5' -59.8 NC_002512.2 + 203021 0.67 0.811096
Target:  5'- gGCGUGAUgCCCCAgaUCAUCGUgaUCAGGaUCu -3'
miRNA:   3'- -CGCGCUA-GGGGU--GGUGGCA--GGUCC-AG- -5'
9387 5' -59.8 NC_002512.2 + 192909 0.67 0.811096
Target:  5'- cGCgGCGGUCCagagCCGCCuCCGaugCCAGGg- -3'
miRNA:   3'- -CG-CGCUAGG----GGUGGuGGCa--GGUCCag -5'
9387 5' -59.8 NC_002512.2 + 157330 0.67 0.810269
Target:  5'- cGCGUGAUCgacgaguccguguUCCGCCugGCCGcCgAGGUCc -3'
miRNA:   3'- -CGCGCUAG-------------GGGUGG--UGGCaGgUCCAG- -5'
9387 5' -59.8 NC_002512.2 + 154960 0.67 0.802766
Target:  5'- cCGCGGUCCgCGauCCGCC-UCCGGGcCu -3'
miRNA:   3'- cGCGCUAGGgGU--GGUGGcAGGUCCaG- -5'
9387 5' -59.8 NC_002512.2 + 182633 0.67 0.802766
Target:  5'- cGCGCGAUCUUCuccagcGCCugCGUCUcGGcCu -3'
miRNA:   3'- -CGCGCUAGGGG------UGGugGCAGGuCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.