miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9388 3' -50.8 NC_002512.2 + 176483 0.66 0.99891
Target:  5'- cCUGgAUGGCGgccGCCAGga-AGCCCGu -3'
miRNA:   3'- aGACaUGUUGCa--UGGUCaagUCGGGC- -5'
9388 3' -50.8 NC_002512.2 + 107180 0.66 0.99891
Target:  5'- cCUGguugaagACGACGUGCaCGGgcacCAGCCgGg -3'
miRNA:   3'- aGACa------UGUUGCAUG-GUCaa--GUCGGgC- -5'
9388 3' -50.8 NC_002512.2 + 213372 0.66 0.997753
Target:  5'- gCUGgcgGCGACaGUGCUAucgUCGGUCCGg -3'
miRNA:   3'- aGACa--UGUUG-CAUGGUca-AGUCGGGC- -5'
9388 3' -50.8 NC_002512.2 + 164117 0.66 0.997753
Target:  5'- --aGUACAACGc-CCAGaagCAGUCCGu -3'
miRNA:   3'- agaCAUGUUGCauGGUCaa-GUCGGGC- -5'
9388 3' -50.8 NC_002512.2 + 137128 0.67 0.996867
Target:  5'- aUCUacaACGACGUAUCGGUg-AGCCUGg -3'
miRNA:   3'- -AGAca-UGUUGCAUGGUCAagUCGGGC- -5'
9388 3' -50.8 NC_002512.2 + 199876 0.67 0.996867
Target:  5'- uUCUGUGCGGCGgcucGCCcuGGUcUCGagaccGCCCGu -3'
miRNA:   3'- -AGACAUGUUGCa---UGG--UCA-AGU-----CGGGC- -5'
9388 3' -50.8 NC_002512.2 + 207029 0.67 0.996326
Target:  5'- gUUGUGCAGCGUGCC-GUcCGGCa-- -3'
miRNA:   3'- aGACAUGUUGCAUGGuCAaGUCGggc -5'
9388 3' -50.8 NC_002512.2 + 111480 0.67 0.995013
Target:  5'- gCUGUG-AGCGUGCCAGUagacggagAGUCCGg -3'
miRNA:   3'- aGACAUgUUGCAUGGUCAag------UCGGGC- -5'
9388 3' -50.8 NC_002512.2 + 190349 0.68 0.991251
Target:  5'- cCUcUACGACG-ACgGGggcgUCGGCCCGg -3'
miRNA:   3'- aGAcAUGUUGCaUGgUCa---AGUCGGGC- -5'
9388 3' -50.8 NC_002512.2 + 214749 0.68 0.990027
Target:  5'- cCUGcgcggaACAGCGUGCCGucgCAGUCCGg -3'
miRNA:   3'- aGACa-----UGUUGCAUGGUcaaGUCGGGC- -5'
9388 3' -50.8 NC_002512.2 + 128198 0.7 0.97734
Target:  5'- --cGUACAGCGUgaggaaaccGCCGacGUagaUCGGCCCGg -3'
miRNA:   3'- agaCAUGUUGCA---------UGGU--CA---AGUCGGGC- -5'
9388 3' -50.8 NC_002512.2 + 229690 0.73 0.904812
Target:  5'- ----cGCGACGggggGCCAGggCAGCCCa -3'
miRNA:   3'- agacaUGUUGCa---UGGUCaaGUCGGGc -5'
9388 3' -50.8 NC_002512.2 + 287 0.73 0.904812
Target:  5'- ----cGCGACGggggGCCAGggCAGCCCa -3'
miRNA:   3'- agacaUGUUGCa---UGGUCaaGUCGGGc -5'
9388 3' -50.8 NC_002512.2 + 219022 0.74 0.891793
Target:  5'- gCUGcUGCGACGUGCUGGUcuacgucgUCGGCCgCGg -3'
miRNA:   3'- aGAC-AUGUUGCAUGGUCA--------AGUCGG-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.