miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9392 5' -47.2 NC_002513.1 + 15866 0.66 0.947859
Target:  5'- ---cAGCUCCAugaaugggggcGCCUUUAAcugGgGCAGCu -3'
miRNA:   3'- cauuUUGAGGU-----------CGGAGAUU---UgCGUCG- -5'
9392 5' -47.2 NC_002513.1 + 16841 0.66 0.942571
Target:  5'- ---cAGCUgCAGCCUCUGGGacCGCucuGUg -3'
miRNA:   3'- cauuUUGAgGUCGGAGAUUU--GCGu--CG- -5'
9392 5' -47.2 NC_002513.1 + 16446 0.66 0.936947
Target:  5'- uGUGAcGCgUCCA-CCU--AAGCGCAGCg -3'
miRNA:   3'- -CAUUuUG-AGGUcGGAgaUUUGCGUCG- -5'
9392 5' -47.2 NC_002513.1 + 28858 0.66 0.930983
Target:  5'- aGUAAAugUCguGCUUC-GGACGCuuguGCc -3'
miRNA:   3'- -CAUUUugAGguCGGAGaUUUGCGu---CG- -5'
9392 5' -47.2 NC_002513.1 + 7737 0.66 0.930983
Target:  5'- -gAAGGCcccuUCCAG-CUCUAAACG-AGCg -3'
miRNA:   3'- caUUUUG----AGGUCgGAGAUUUGCgUCG- -5'
9392 5' -47.2 NC_002513.1 + 9761 0.67 0.924677
Target:  5'- uUGAccCUCaCGGUCUCUAAACacauuagaugGCGGCa -3'
miRNA:   3'- cAUUuuGAG-GUCGGAGAUUUG----------CGUCG- -5'
9392 5' -47.2 NC_002513.1 + 4056 0.67 0.918031
Target:  5'- uGUGGAACUauaaaaaauaCAGUUUCUGGGgGCGGUg -3'
miRNA:   3'- -CAUUUUGAg---------GUCGGAGAUUUgCGUCG- -5'
9392 5' -47.2 NC_002513.1 + 8449 0.69 0.852982
Target:  5'- -gGAAguGCcCCAGCCUCaaguaGCAGCa -3'
miRNA:   3'- caUUU--UGaGGUCGGAGauuugCGUCG- -5'
9392 5' -47.2 NC_002513.1 + 547 0.69 0.823635
Target:  5'- -cAGAAuCUCCAGUCaaaagCUAAGCGCAaGUg -3'
miRNA:   3'- caUUUU-GAGGUCGGa----GAUUUGCGU-CG- -5'
9392 5' -47.2 NC_002513.1 + 11319 0.69 0.823635
Target:  5'- -aAGAGCagCAGCCUaguaUUAGGCGuCAGCa -3'
miRNA:   3'- caUUUUGagGUCGGA----GAUUUGC-GUCG- -5'
9392 5' -47.2 NC_002513.1 + 15657 0.7 0.792054
Target:  5'- -gAuuGCUgCGGCCa-UAGGCGCGGCg -3'
miRNA:   3'- caUuuUGAgGUCGGagAUUUGCGUCG- -5'
9392 5' -47.2 NC_002513.1 + 15558 0.72 0.672108
Target:  5'- uUGGAACUCCAGUCaucgCgaaaaaggagacccUAAACGCAGUa -3'
miRNA:   3'- cAUUUUGAGGUCGGa---G--------------AUUUGCGUCG- -5'
9392 5' -47.2 NC_002513.1 + 3054 0.77 0.418391
Target:  5'- uGgcGAACUCCAGCCcaguGACGCAGa -3'
miRNA:   3'- -CauUUUGAGGUCGGagauUUGCGUCg -5'
9392 5' -47.2 NC_002513.1 + 18555 1.13 0.001838
Target:  5'- cGUAAAACUCCAGCCUCUAAACGCAGCc -3'
miRNA:   3'- -CAUUUUGAGGUCGGAGAUUUGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.