miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9395 5' -55.6 NC_002513.1 + 14706 0.66 0.52424
Target:  5'- ---uGCCCuuuCAcGGCUGCGGac-GCCa -3'
miRNA:   3'- auucCGGGu--GUaCCGACGCCguuUGG- -5'
9395 5' -55.6 NC_002513.1 + 15406 0.66 0.491238
Target:  5'- gGAGugcGCUUGCGUGGCgcUGCGaCAAACCg -3'
miRNA:   3'- aUUC---CGGGUGUACCG--ACGCcGUUUGG- -5'
9395 5' -55.6 NC_002513.1 + 26327 0.66 0.480451
Target:  5'- gGAGGUgCGCAagUGGCUGUuacuuGGC--ACCa -3'
miRNA:   3'- aUUCCGgGUGU--ACCGACG-----CCGuuUGG- -5'
9395 5' -55.6 NC_002513.1 + 172 0.67 0.44881
Target:  5'- aAAGGUCCGCAguGCUGCGuCAucacguGCCa -3'
miRNA:   3'- aUUCCGGGUGUacCGACGCcGUu-----UGG- -5'
9395 5' -55.6 NC_002513.1 + 8817 0.67 0.428368
Target:  5'- --cGGCCCGCGuuuUGGacccuuaUGCGGUcAGCUa -3'
miRNA:   3'- auuCCGGGUGU---ACCg------ACGCCGuUUGG- -5'
9395 5' -55.6 NC_002513.1 + 9001 0.67 0.408485
Target:  5'- -cAGGCCgauGCGUGGCUuugGGCGGACUa -3'
miRNA:   3'- auUCCGGg--UGUACCGAcg-CCGUUUGG- -5'
9395 5' -55.6 NC_002513.1 + 4186 0.73 0.1844
Target:  5'- --cGGaCCCAC-UGGUUGUGGUAAAUCu -3'
miRNA:   3'- auuCC-GGGUGuACCGACGCCGUUUGG- -5'
9395 5' -55.6 NC_002513.1 + 9848 1.1 0.000317
Target:  5'- cUAAGGCCCACAUGGCUGCGGCAAACCu -3'
miRNA:   3'- -AUUCCGGGUGUACCGACGCCGUUUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.