miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9399 5' -55.6 NC_002513.1 + 15344 1.08 0.000463
Target:  5'- gGUUUGUCGCAGCGCCACGCAAGCGCAc -3'
miRNA:   3'- -CAAACAGCGUCGCGGUGCGUUCGCGU- -5'
9399 5' -55.6 NC_002513.1 + 12095 0.7 0.29873
Target:  5'- --aUGUCGCgcuGGCG-CACGUAcGCGCAa -3'
miRNA:   3'- caaACAGCG---UCGCgGUGCGUuCGCGU- -5'
9399 5' -55.6 NC_002513.1 + 13992 0.66 0.506865
Target:  5'- ---cGcCGCcgacgcagagcagAGCGCCGcCGCAGGCGUc -3'
miRNA:   3'- caaaCaGCG-------------UCGCGGU-GCGUUCGCGu -5'
9399 5' -55.6 NC_002513.1 + 32709 0.66 0.53012
Target:  5'- --gUGaggCGCAGUGCUgaGCuaAAGCGCAc -3'
miRNA:   3'- caaACa--GCGUCGCGG--UGcgUUCGCGU- -5'
9399 5' -55.6 NC_002513.1 + 10737 0.66 0.497031
Target:  5'- ---gGUCGCgggacgugAGCGCCAUGau-GCGCu -3'
miRNA:   3'- caaaCAGCG--------UCGCGGUGCguuCGCGu -5'
9399 5' -55.6 NC_002513.1 + 16140 0.66 0.475496
Target:  5'- ----uUCuaGGCGCCGCuGCAcAGCGCGa -3'
miRNA:   3'- caaacAGcgUCGCGGUG-CGU-UCGCGU- -5'
9399 5' -55.6 NC_002513.1 + 23345 0.67 0.444097
Target:  5'- -cUUGUCGCGGCgGCUA-GUuuuuuuGAGCGCGg -3'
miRNA:   3'- caAACAGCGUCG-CGGUgCG------UUCGCGU- -5'
9399 5' -55.6 NC_002513.1 + 16026 0.74 0.149188
Target:  5'- uUUUGUCGCAGCGCUugacCGguguuacuguucCAAGCGCGa -3'
miRNA:   3'- cAAACAGCGUCGCGGu---GC------------GUUCGCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.