miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9401 3' -42.4 NC_002513.1 + 7481 0.68 0.996002
Target:  5'- uCAAUGGAGUUUaacUGUauagauugugguguuUGCAgCAGGUGa -3'
miRNA:   3'- cGUUAUCUUAAA---AUA---------------ACGUgGUCCGC- -5'
9401 3' -42.4 NC_002513.1 + 16433 0.68 0.994628
Target:  5'- gGCAGUAGAAgcacua-GCGgCGGGCu -3'
miRNA:   3'- -CGUUAUCUUaaaauaaCGUgGUCCGc -5'
9401 3' -42.4 NC_002513.1 + 24220 1.16 0.004893
Target:  5'- cGCAAUAGAAUUUUAUUGCACCAGGCGg -3'
miRNA:   3'- -CGUUAUCUUAAAAUAACGUGGUCCGC- -5'
9401 3' -42.4 NC_002513.1 + 24320 0.69 0.989811
Target:  5'- aGCAGgcGggUUcaugAUUGCuCUAGGCGu -3'
miRNA:   3'- -CGUUauCuuAAaa--UAACGuGGUCCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.