miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9402 3' -45.5 NC_002519.1 + 18674 0.68 0.96222
Target:  5'- aCUGCGuccauGUGUccuGUAAUGCcUGCGACu -3'
miRNA:   3'- cGAUGUu----CACGuu-CAUUACG-ACGUUG- -5'
9402 3' -45.5 NC_002519.1 + 7658 0.69 0.918331
Target:  5'- uGCUACGAGUGCAAcUAAcGCaGgAGCc -3'
miRNA:   3'- -CGAUGUUCACGUUcAUUaCGaCgUUG- -5'
9402 3' -45.5 NC_002519.1 + 38430 0.71 0.86206
Target:  5'- uUUGCAAGUGCGAGUGuUGCUa---- -3'
miRNA:   3'- cGAUGUUCACGUUCAUuACGAcguug -5'
9402 3' -45.5 NC_002519.1 + 7346 0.71 0.86206
Target:  5'- uGCUGCAaccAGUGaaacaAAUGCUGCGGCc -3'
miRNA:   3'- -CGAUGU---UCACguucaUUACGACGUUG- -5'
9402 3' -45.5 NC_002519.1 + 7195 0.72 0.791215
Target:  5'- uCUACAAGUGCGAccAAUGCgGCuACa -3'
miRNA:   3'- cGAUGUUCACGUUcaUUACGaCGuUG- -5'
9402 3' -45.5 NC_002519.1 + 7241 0.78 0.492029
Target:  5'- aGCUACAAcucagGCAAccAAUGCUGCAACg -3'
miRNA:   3'- -CGAUGUUca---CGUUcaUUACGACGUUG- -5'
9402 3' -45.5 NC_002519.1 + 7535 0.81 0.336066
Target:  5'- uGCUGCAguaAGUGaGGGUAAUGCUGCuACa -3'
miRNA:   3'- -CGAUGU---UCACgUUCAUUACGACGuUG- -5'
9402 3' -45.5 NC_002519.1 + 7406 1.13 0.003379
Target:  5'- uGCUACAAGUGCAAGUAAUGCUGCAACc -3'
miRNA:   3'- -CGAUGUUCACGUUCAUUACGACGUUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.