Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9404 | 5' | -49.9 | NC_002519.1 | + | 23241 | 0.66 | 0.861232 |
Target: 5'- -aGAGAAgacuauGCCUUGGg-CCUUGCCUGu -3' miRNA: 3'- aaCUCUU------UGGGAUCgaGGAAUGGAUg -5' |
|||||||
9404 | 5' | -49.9 | NC_002519.1 | + | 33116 | 0.66 | 0.830293 |
Target: 5'- cUGAGcuuguugcugcGCCCUAGCUgaccuacgagcggCUUUACCUGCu -3' miRNA: 3'- aACUCuu---------UGGGAUCGA-------------GGAAUGGAUG- -5' |
|||||||
9404 | 5' | -49.9 | NC_002519.1 | + | 21202 | 0.67 | 0.802962 |
Target: 5'- aUUGAuAAAUCCUGGUUCUgaaccACCUGCu -3' miRNA: 3'- -AACUcUUUGGGAUCGAGGaa---UGGAUG- -5' |
|||||||
9404 | 5' | -49.9 | NC_002519.1 | + | 23859 | 0.68 | 0.770796 |
Target: 5'- -aGGGAGACaccuguaaCUGGCUaCCUUccaACCUGCc -3' miRNA: 3'- aaCUCUUUGg-------GAUCGA-GGAA---UGGAUG- -5' |
|||||||
9404 | 5' | -49.9 | NC_002519.1 | + | 32143 | 0.69 | 0.702289 |
Target: 5'- gUUGaAGAGACCCUuuGCUUCUgcAUCUGCa -3' miRNA: 3'- -AAC-UCUUUGGGAu-CGAGGAa-UGGAUG- -5' |
|||||||
9404 | 5' | -49.9 | NC_002519.1 | + | 23268 | 1.09 | 0.001915 |
Target: 5'- cUUGAGAAACCCUAGCUCCUUACCUACg -3' miRNA: 3'- -AACUCUUUGGGAUCGAGGAAUGGAUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home