miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9413 5' -51.4 NC_002531.1 + 19486 0.66 0.981454
Target:  5'- --uAGugAGUCAUACaCCAGGaaGUCa -3'
miRNA:   3'- auuUUugUCAGUGUG-GGUCCgcCAGa -5'
9413 5' -51.4 NC_002531.1 + 127783 0.66 0.97671
Target:  5'- ------aGGUCACACCCAGGaauGUUUa -3'
miRNA:   3'- auuuuugUCAGUGUGGGUCCgc-CAGA- -5'
9413 5' -51.4 NC_002531.1 + 12347 0.68 0.948784
Target:  5'- --uAGAgAG-CGCcUCCAGGCGGUCa -3'
miRNA:   3'- auuUUUgUCaGUGuGGGUCCGCCAGa -5'
9413 5' -51.4 NC_002531.1 + 60730 0.68 0.944179
Target:  5'- --cAAGCAcaCACACCCAGGUGuGUUUu -3'
miRNA:   3'- auuUUUGUcaGUGUGGGUCCGC-CAGA- -5'
9413 5' -51.4 NC_002531.1 + 13999 0.68 0.944179
Target:  5'- ----cAUAGUCACccuCCCAguGGUGGUCa -3'
miRNA:   3'- auuuuUGUCAGUGu--GGGU--CCGCCAGa -5'
9413 5' -51.4 NC_002531.1 + 34019 0.68 0.934179
Target:  5'- aAAGGAC-GUgGCACCCaagcaaccuaGGGUGGUCa -3'
miRNA:   3'- aUUUUUGuCAgUGUGGG----------UCCGCCAGa -5'
9413 5' -51.4 NC_002531.1 + 34675 0.68 0.92878
Target:  5'- -uGAGAUAccCGCugCCuGGCGGUCUa -3'
miRNA:   3'- auUUUUGUcaGUGugGGuCCGCCAGA- -5'
9413 5' -51.4 NC_002531.1 + 477 0.69 0.917182
Target:  5'- cAAAGgcACAGaaACACCCGuGCGGUCUc -3'
miRNA:   3'- aUUUU--UGUCagUGUGGGUcCGCCAGA- -5'
9413 5' -51.4 NC_002531.1 + 80792 0.7 0.883578
Target:  5'- aGAAggUAGUCGgcuCugCCAGGUGGUg- -3'
miRNA:   3'- aUUUuuGUCAGU---GugGGUCCGCCAga -5'
9413 5' -51.4 NC_002531.1 + 20422 0.72 0.779351
Target:  5'- --cGAGCAGUCAUACuCCAGGUGcGUg- -3'
miRNA:   3'- auuUUUGUCAGUGUG-GGUCCGC-CAga -5'
9413 5' -51.4 NC_002531.1 + 600 1.06 0.009295
Target:  5'- cUAAAAACAGUCACACCCAGGCGGUCUc -3'
miRNA:   3'- -AUUUUUGUCAGUGUGGGUCCGCCAGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.