miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9416 5' -58.5 NC_002531.1 + 67066 0.67 0.760179
Target:  5'- -cGGCGGGAGcuGGGAAAAGCaCUagcauugCCGCUc -3'
miRNA:   3'- ccUCGCCCUC--CCUUUUUCG-GG-------GGCGG- -5'
9416 5' -58.5 NC_002531.1 + 30316 0.67 0.742144
Target:  5'- uGAGCGGGugcGGGAguuuaAGGAGCgcaauccacuCCCUGUCu -3'
miRNA:   3'- cCUCGCCCu--CCCU-----UUUUCG----------GGGGCGG- -5'
9416 5' -58.5 NC_002531.1 + 54742 0.67 0.732514
Target:  5'- gGGGGUGGGuagcuGGGggGuaagcuuaAAGCUCCCuaauCCa -3'
miRNA:   3'- -CCUCGCCCu----CCCuuU--------UUCGGGGGc---GG- -5'
9416 5' -58.5 NC_002531.1 + 38048 0.67 0.732514
Target:  5'- gGGGGCGagcGGuGGGAAGugcGGGCCCaCCuguuauuuaagaGCCa -3'
miRNA:   3'- -CCUCGC---CCuCCCUUU---UUCGGG-GG------------CGG- -5'
9416 5' -58.5 NC_002531.1 + 118200 0.67 0.732514
Target:  5'- gGGAGCagaGGGAucugaaGGAGAAGGCCCauGCa -3'
miRNA:   3'- -CCUCG---CCCUc-----CCUUUUUCGGGggCGg -5'
9416 5' -58.5 NC_002531.1 + 38771 0.68 0.651141
Target:  5'- -aAGCGGGGGGGcucuaagaagcuAAAGGCCCCgGg- -3'
miRNA:   3'- ccUCGCCCUCCCu-----------UUUUCGGGGgCgg -5'
9416 5' -58.5 NC_002531.1 + 16456 0.69 0.643075
Target:  5'- uGGGCGGGcuGGGAAAGAGaCCuuCCUGUg -3'
miRNA:   3'- cCUCGCCCu-CCCUUUUUC-GG--GGGCGg -5'
9416 5' -58.5 NC_002531.1 + 34546 0.69 0.622897
Target:  5'- gGGGGCGGG-GGGu----GCUCCaggGCCu -3'
miRNA:   3'- -CCUCGCCCuCCCuuuuuCGGGGg--CGG- -5'
9416 5' -58.5 NC_002531.1 + 96533 0.69 0.592699
Target:  5'- cGGcuGGUGGGAGGGuguggguuuuAGAGCCUUCGUg -3'
miRNA:   3'- -CC--UCGCCCUCCCuu--------UUUCGGGGGCGg -5'
9416 5' -58.5 NC_002531.1 + 84933 0.74 0.371889
Target:  5'- uGAGCGagcGGAGGGAGcgGGCCUCUGUUu -3'
miRNA:   3'- cCUCGC---CCUCCCUUuuUCGGGGGCGG- -5'
9416 5' -58.5 NC_002531.1 + 11551 1.13 0.000801
Target:  5'- aGGAGCGGGAGGGAAAAAGCCCCCGCCu -3'
miRNA:   3'- -CCUCGCCCUCCCUUUUUCGGGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.