miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9417 3' -58.3 NC_002531.1 + 49060 0.66 0.777657
Target:  5'- cCGGGGUGGgccaGAUaucUCACCCGCcagGGCu -3'
miRNA:   3'- -GUCCCACCg---UUGc--AGUGGGUGa--CCGu -5'
9417 3' -58.3 NC_002531.1 + 114720 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114691 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114634 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114605 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114576 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114547 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114518 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114489 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114460 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114431 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114402 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114373 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114315 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114344 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114286 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114257 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114228 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114199 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114170 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.