miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9417 3' -58.3 NC_002531.1 + 115853 0.69 0.587304
Target:  5'- gGGGGcUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gUCCC-ACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115821 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115792 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115763 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115734 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115705 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115676 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115619 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115590 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115561 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115532 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115503 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115474 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115445 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115416 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115387 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115358 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115329 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115300 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115271 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.